Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00961 ATGGGTGAGCCTGATACCGAGGTTGAAGTCTCTGAGACAATAAAAGATGAAGCTAGCCCGACAGAGAAAATCTCTGAAATTGTTAATGAGAAGAAAGGGGAGGCAAATGGCGGCGTAACTGAAATGGAAGAAGATCCAAAAGCTGATCCCAAGGTTGACTGTATAAAGATGGATGATGACGCAGAAATAAAGGAAGACGAGACAAGCAAACAAACAAAAGATGATGAAGGGGAGAAACCAATTGTAGAAACAAAAGAAGAGAAAGAAGAAGCCATCGTTGTGGAAGAGAAAGAGAAGGATGAAATTGGAGTTGAAACTGAGGAAAAGAATGTAGAGGTTGAAATTGAAACTAAGAAACACAATGAGGTTCGTGGAGTCGAATCTAATGAAAAAAGTGAGGATTTTGGAGTTAAAACTAATGAAAAAAAGGAGGATTCTGGAGTCGAACCCAAGGAAAAGGATGAGGATTCTAGAATTGAGTCTACGGAAAAGGATGAGGAACCTGAAGTCAAAACAAAGGAGGGAAAAGAAGATCCAGGGGTGCAGCTAATGGAAGAAGATACACATGATAACGGAATAGAAGAGATACAAGAGTTGAAGCAGGTTGATGAGGCTAAGGAAGAAGAAGAATTAGAAGAGATGGAAGATGAGAGGGAAAAAGAGATTGAGGTGGAGAAGGGTTCAAAAAAACACGGAAGGAGGAAGAGTTCAGGGAAAGTGAGAGAAAAGAAGAATAAATTGGAAGAGAAGGAACCAGAACAAAGGACACCCATAACCGATCGCCCTGTACGTGAAAGAAAATCAGTTGAAAGGCTAGTTGCATCAATTGAAAGAGACAGCGGGAAGGAATTCCATATTCAGAAGGGCCGTGGTACACCTCTTAAGGATATACCCAATGTGGCATTCAAACTATCCAGGAAGAAGAGTGATGATACCTTTAAGCTGCTTCATTCTATTCTCTTTGGTAGGAGAGGAAAGGCATTTCAGGTGAAAAGCAATATATCTCGGTTTTCTGGTTTTGTTTGGCAGGAAAAAGAGGAAAAACAAAGGAATAAAGTGAAAGAAAAATTTGATAAATGTACAAAAGAGAAGTTGCTGGAATTTTGTGATGTGCTTGACATCCAAGTTGCAAAAGCTACCACAAGGAAGGAAGATATTGTCGCTAAACTGATTGAGTTTTTGGTTGCTCCTCATCCAACAACGACTGTGCATCTTGCTGAAACAGAAAAGTCAAGCAGGGGACAGAAACGTAAAAGAGGAGTTAAAAGTAGTTCATCAACTCCTGGAAGCAATGATTCAAAACATTCATCAAAGAGTCGACGAAAGAGTGAAGATATTTCTAAATCTGAGGTAACAAAGGATGTGCCTGATATTGGAGATGAGTCAGAAGAAGAAGAAGAAAGTGACGAAGAAAATGAAGAGCGATATCAAAATGGATCACCGGAAAAGCCTAAGGATGATATGCCTGAGGATTCAGAAAGTGAGAAGCAGAATGATCCAACAGATGAATCTGAAGAAGAAAAACCTAAGCGAAGGTCGAAAAGTTCTAGTAGAAAAAAGGAAACTACTGGAAAATCTAGAAGTAAGAAAATTGTGGTTTCTCCGAGATCCAGTCCTCCGCCCAAGAGAACAGCAAAGAAAGCCTCTAAAAGCTCTACAGTTGATGAGGATGAAATAAGTCCTAAGGTATTCTCAAGGAAGAGGAGCAATGAAAAAGTCAAGGGTAGTGCCACAAATCCTAAAACTGCTCTGAAGGAGAAAGTTGGGAGAAAGGGTGGTAAGGGAAAGGACAAGCGGAAAGAAGAGAAATTGAGGTTAACTGATGATGAACTTAGAGATGCAATTTGTGAAATTCTTAAAGAAGTCGACTTCAATACAGCTACTTTCACGGATATTCTGAAGCAGCTTGGTATAATTTTGGATCTGAGATATCCAATGCTTTTTGTCTTGCCCATTTCAGCTAATCGATATAAAACTGACCTTACCCCAAGAAAGTCGGCCATAAAGCTCATGATCCAAGAGGAGCTCACTAAACTAGCAGATGAGGCAGACGATGAAGAAGAAGAAGACGACGAAGAAGCCGGAGGAGGGAAAGACAAAACACATGCTAAAGGTCAAGAAGTGGAAACTTGA 2133 40.13 MGEPDTEVEVSETIKDEASPTEKISEIVNEKKGEANGGVTEMEEDPKADPKVDCIKMDDDAEIKEDETSKQTKDDEGEKPIVETKEEKEEAIVVEEKEKDEIGVETEEKNVEVEIETKKHNEVRGVESNEKSEDFGVKTNEKKEDSGVEPKEKDEDSRIESTEKDEEPEVKTKEGKEDPGVQLMEEDTHDNGIEEIQELKQVDEAKEEEELEEMEDEREKEIEVEKGSKKHGRRKSSGKVREKKNKLEEKEPEQRTPITDRPVRERKSVERLVASIERDSGKEFHIQKGRGTPLKDIPNVAFKLSRKKSDDTFKLLHSILFGRRGKAFQVKSNISRFSGFVWQEKEEKQRNKVKEKFDKCTKEKLLEFCDVLDIQVAKATTRKEDIVAKLIEFLVAPHPTTTVHLAETEKSSRGQKRKRGVKSSSSTPGSNDSKHSSKSRRKSEDISKSEVTKDVPDIGDESEEEEESDEENEERYQNGSPEKPKDDMPEDSESEKQNDPTDESEEEKPKRRSKSSSRKKETTGKSRSKKIVVSPRSSPPPKRTAKKASKSSTVDEDEISPKVFSRKRSNEKVKGSATNPKTALKEKVGRKGGKGKDKRKEEKLRLTDDELRDAICEILKEVDFNTATFTDILKQLGIILDLRYPMLFVLPISANRYKTDLTPRKSAIKLMIQEELTKLADEADDEEEEDDEEAGGGKDKTHAKGQEVET 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40817134 40822421 + Bda009509.1 Bda12g00961 17976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00961 710 MobiDBLite consensus disorder prediction 474 512 - -
Bda12g00961 710 Coils Coil 343 363 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 241 269 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 584 603 - -
Bda12g00961 710 Coils Coil 669 689 - -
Bda12g00961 710 Coils Coil 197 224 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 548 574 - -
Bda12g00961 710 PANTHER PROTEIN DEK 151 692 - -
Bda12g00961 710 Gene3D - 596 640 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 678 710 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 1 269 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 8 204 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 457 473 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 679 694 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 695 710 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 434 456 - -
Bda12g00961 710 MobiDBLite consensus disorder prediction 404 603 - -
Bda12g00961 710 PANTHER DEK PROTEIN 151 692 IPR044198 GO:0003677|GO:0006325
Bda12g00961 710 Pfam DEK C terminal domain 607 636 IPR014876 -
Bda12g00961 710 MobiDBLite consensus disorder prediction 205 219 - -
Bda12g00961 710 SUPERFAMILY DEK C-terminal domain 603 676 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00961 K17046 DEK; protein DEK - tcc:18593293 509.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00718 Bda-Chr6:9880448 Bda12g00961 Bda-Chr12:40817134 1.93E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g658 . . . . . . . Bma13g01112 . Cmo06g00688 . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1216 Cone15ag1237 . . . . . Blo10g00863 . Bda12g00961 . . . . . . . . . . . Cpe14g00791 . . . . . . . . . . . . . . . Lsi05g00493 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007248 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00961 Bda_Chr12 FPKM 5.443722 4.836549 8.266099 8.837412 8.662247 8.566975 10.527154 17.988281 17.959404