Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda12g00962 | ATGGCGGACTCGGACAACGACTCTTTTGGACACACAGCGACGAACAGCGAGCAATCCCCGAGGGAACAGGACAGACTGTTGCCGATTGCTAACGTGAGCAGGATAATGAAGAAGGCCTTACCGGCAAACGCGAAGATCTCCAAAGACGCGAAGGAGACGGTTCAGGAGTGCGTTTCCGAATTTATCAGCTTCGTAACCGGCGAGGCGTCGGACAAGTGCCAAAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTACTCTGGGCAATGACGACGCTAGGGTTTGAGGACTACATGGAGCCTCTGAAGATATACCTGCAGAGGTTTAGGGAGATAGAAGGGGAGAAAACGGCCGTGGCGCGTGATAAAGACGGCGGTGGGAGGAGCGTAGGTGACGTTGGTAGTGGTGAGGCAGGTGGGCCATACGGAGGCGGAATGGGTATGACGATGATGGGCGGCCAGCTTCAACTTCATCAGGGACACGTGTACAGCGGAAGCGAATTCCATCAGACGGCTGTGATTAGTGGACAAAGTCGGGGCGGGCCTGGTTATTCCGGTCACGGACCCCATACGGGTCGGTCCAGGTAG | 588 | 55.95 | MADSDNDSFGHTATNSEQSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYMEPLKIYLQRFREIEGEKTAVARDKDGGGRSVGDVGSGEAGGPYGGGMGMTMMGGQLQLHQGHVYSGSEFHQTAVISGQSRGGPGYSGHGPHTGRSR | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 40824349 | 40824936 | + | Bda009510.1 | Bda12g00962 | 17977 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda12g00962 | 195 | MobiDBLite | consensus disorder prediction | 174 | 195 | - | - | |
Bda12g00962 | 195 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Bda12g00962 | 195 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 166 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Bda12g00962 | 195 | SUPERFAMILY | Histone-fold | 23 | 136 | IPR009072 | GO:0046982 | |
Bda12g00962 | 195 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 57 | 73 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Bda12g00962 | 195 | Gene3D | Histone, subunit A | 13 | 132 | IPR009072 | GO:0046982 | |
Bda12g00962 | 195 | PRINTS | CCAAT-binding transcription factor subunit A signature | 54 | 72 | - | - | |
Bda12g00962 | 195 | PRINTS | CCAAT-binding transcription factor subunit A signature | 73 | 91 | - | - | |
Bda12g00962 | 195 | PRINTS | CCAAT-binding transcription factor subunit A signature | 92 | 110 | - | - | |
Bda12g00962 | 195 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 | 1 | 166 | - | - | |
Bda12g00962 | 195 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Bda12g00962 | 195 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 26 | 90 | IPR003958 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda07g00410 | Bda12g00962 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda06g00410 | Bda-Chr6:6267634 | Bda12g00962 | Bda-Chr12:40824349 | 2.90E-76 | dispersed | |
Bda12g00962 | Bda-Chr12:40824349 | Bda13g00590 | Bda-Chr13:6927795 | 3.80E-70 | dispersed | |
Bda04g00601 | Bda-Chr4:54650518 | Bda12g00962 | Bda-Chr12:40824349 | 4.08E-48 | transposed | |
Bda12g00962 | Bda-Chr12:40824349 | Bda07g00410 | Bda-Chr7:5279521 | 2.18E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16821 | PF00808 | CBFD_NFYB_HMF | 3.40E-27 | CL0012 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda12g00962 | K08065 | - | gmx:100813169 | 239.965 |