Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00962 ATGGCGGACTCGGACAACGACTCTTTTGGACACACAGCGACGAACAGCGAGCAATCCCCGAGGGAACAGGACAGACTGTTGCCGATTGCTAACGTGAGCAGGATAATGAAGAAGGCCTTACCGGCAAACGCGAAGATCTCCAAAGACGCGAAGGAGACGGTTCAGGAGTGCGTTTCCGAATTTATCAGCTTCGTAACCGGCGAGGCGTCGGACAAGTGCCAAAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTACTCTGGGCAATGACGACGCTAGGGTTTGAGGACTACATGGAGCCTCTGAAGATATACCTGCAGAGGTTTAGGGAGATAGAAGGGGAGAAAACGGCCGTGGCGCGTGATAAAGACGGCGGTGGGAGGAGCGTAGGTGACGTTGGTAGTGGTGAGGCAGGTGGGCCATACGGAGGCGGAATGGGTATGACGATGATGGGCGGCCAGCTTCAACTTCATCAGGGACACGTGTACAGCGGAAGCGAATTCCATCAGACGGCTGTGATTAGTGGACAAAGTCGGGGCGGGCCTGGTTATTCCGGTCACGGACCCCATACGGGTCGGTCCAGGTAG 588 55.95 MADSDNDSFGHTATNSEQSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYMEPLKIYLQRFREIEGEKTAVARDKDGGGRSVGDVGSGEAGGPYGGGMGMTMMGGQLQLHQGHVYSGSEFHQTAVISGQSRGGPGYSGHGPHTGRSR 195
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 40824349 40824936 + Bda009510.1 Bda12g00962 17977
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00962 195 MobiDBLite consensus disorder prediction 174 195 - -
Bda12g00962 195 MobiDBLite consensus disorder prediction 1 26 - -
Bda12g00962 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 166 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bda12g00962 195 SUPERFAMILY Histone-fold 23 136 IPR009072 GO:0046982
Bda12g00962 195 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bda12g00962 195 Gene3D Histone, subunit A 13 132 IPR009072 GO:0046982
Bda12g00962 195 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Bda12g00962 195 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Bda12g00962 195 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Bda12g00962 195 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 166 - -
Bda12g00962 195 MobiDBLite consensus disorder prediction 1 22 - -
Bda12g00962 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Bda07g00410 Bda12g00962 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00410 Bda-Chr6:6267634 Bda12g00962 Bda-Chr12:40824349 2.90E-76 dispersed
Bda12g00962 Bda-Chr12:40824349 Bda13g00590 Bda-Chr13:6927795 3.80E-70 dispersed
Bda04g00601 Bda-Chr4:54650518 Bda12g00962 Bda-Chr12:40824349 4.08E-48 transposed
Bda12g00962 Bda-Chr12:40824349 Bda07g00410 Bda-Chr7:5279521 2.18E-68 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16821 PF00808 CBFD_NFYB_HMF 3.40E-27 CL0012 Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00962 K08065 - gmx:100813169 239.965