Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bda12g00962	ATGGCGGACTCGGACAACGACTCTTTTGGACACACAGCGACGAACAGCGAGCAATCCCCGAGGGAACAGGACAGACTGTTGCCGATTGCTAACGTGAGCAGGATAATGAAGAAGGCCTTACCGGCAAACGCGAAGATCTCCAAAGACGCGAAGGAGACGGTTCAGGAGTGCGTTTCCGAATTTATCAGCTTCGTAACCGGCGAGGCGTCGGACAAGTGCCAAAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTACTCTGGGCAATGACGACGCTAGGGTTTGAGGACTACATGGAGCCTCTGAAGATATACCTGCAGAGGTTTAGGGAGATAGAAGGGGAGAAAACGGCCGTGGCGCGTGATAAAGACGGCGGTGGGAGGAGCGTAGGTGACGTTGGTAGTGGTGAGGCAGGTGGGCCATACGGAGGCGGAATGGGTATGACGATGATGGGCGGCCAGCTTCAACTTCATCAGGGACACGTGTACAGCGGAAGCGAATTCCATCAGACGGCTGTGATTAGTGGACAAAGTCGGGGCGGGCCTGGTTATTCCGGTCACGGACCCCATACGGGTCGGTCCAGGTAG	588	55.95	MADSDNDSFGHTATNSEQSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYMEPLKIYLQRFREIEGEKTAVARDKDGGGRSVGDVGSGEAGGPYGGGMGMTMMGGQLQLHQGHVYSGSEFHQTAVISGQSRGGPGYSGHGPHTGRSR	195

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
12	40824349	40824936	+	Bda009510.1	Bda12g00962	17977

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bda12g00962	195	MobiDBLite	consensus disorder prediction	174	195	-	-
	Bda12g00962	195	MobiDBLite	consensus disorder prediction	1	26	-	-
	Bda12g00962	195	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	1	166	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
	Bda12g00962	195	SUPERFAMILY	Histone-fold	23	136	IPR009072	GO:0046982
	Bda12g00962	195	ProSitePatterns	NF-YB/HAP3 subunit signature.	57	73	IPR003956	GO:0005634\|GO:0006355\|GO:0043565
	Bda12g00962	195	Gene3D	Histone, subunit A	13	132	IPR009072	GO:0046982
	Bda12g00962	195	PRINTS	CCAAT-binding transcription factor subunit A signature	54	72	-	-
	Bda12g00962	195	PRINTS	CCAAT-binding transcription factor subunit A signature	73	91	-	-
	Bda12g00962	195	PRINTS	CCAAT-binding transcription factor subunit A signature	92	110	-	-
	Bda12g00962	195	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2	1	166	-	-
	Bda12g00962	195	MobiDBLite	consensus disorder prediction	1	22	-	-
	Bda12g00962	195	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	26	90	IPR003958	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bda07g00410	Bda12g00962	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bda06g00410	Bda-Chr6:6267634	Bda12g00962	Bda-Chr12:40824349	2.90E-76	dispersed
	Bda12g00962	Bda-Chr12:40824349	Bda13g00590	Bda-Chr13:6927795	3.80E-70	dispersed
	Bda04g00601	Bda-Chr4:54650518	Bda12g00962	Bda-Chr12:40824349	4.08E-48	transposed
	Bda12g00962	Bda-Chr12:40824349	Bda07g00410	Bda-Chr7:5279521	2.18E-68	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	16821	PF00808	CBFD_NFYB_HMF	3.40E-27	CL0012	Bda	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bda12g00962	K08065		-	gmx:100813169	239.965