Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00966 ATGCACTTGCGCATGTTTGAGTTGGCAAGAGATGCGATGAGGTCCGAGGGCTGTTCTGTGATTGGAGGTTATATGTCACCTGTTAATGATGCCTATAAGAAAAGGGGACTTATATCTGCCGAACATCGGGTAAATTTGTGTAATCTAGCTTGTCAAAGTTCCGAATTCGTAATGGTCGATCCCTGGGAGGCAAGTCAAAATGCCTATCAACGCACATTAACTGTTTTGTCGCGAGTCAAGAACTCGTTATGTGAAGACGGGCTTGTTCCGAAAGAATCCCTTAAGGTCATGCTCGTTTGTGGTTCGGATCTCATTCAGTCTTTTGGTATTCCTGGAGTTTGGATTCCTGATCAAGTGCGAAGCATATGCAAAGATTTCGGAGTTGTTTGCATTCGTAGAGAAGGACAAGATATCGAAAAAATAATATTAGAGAATGAAATTCTGCTAGAGAATCGGGATAACATCAAAGTTATCGATGAAATAATTCCGAATCAAATAAGTTCAACCAGAGTACGGGACTGCATTTCGAGAGGGCTGTCAATAAAATATTTGACTTCCGACGAAGTTATCGAGTATATCAAAGAACACAATCTTTATTTGGAGTCTTCTAATGCTAATTAA 621 40.26 MHLRMFELARDAMRSEGCSVIGGYMSPVNDAYKKRGLISAEHRVNLCNLACQSSEFVMVDPWEASQNAYQRTLTVLSRVKNSLCEDGLVPKESLKVMLVCGSDLIQSFGIPGVWIPDQVRSICKDFGVVCIRREGQDIEKIILENEILLENRDNIKVIDEIIPNQISSTRVRDCISRGLSIKYLTSDEVIEYIKEHNLYLESSNAN 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40840293 40842542 - Bda009514.1 Bda12g00966 17981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00966 206 TIGRFAM TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 1 199 IPR005248 GO:0009435|GO:0016779
Bda12g00966 206 Gene3D HUPs 1 206 IPR014729 -
Bda12g00966 206 PANTHER NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE 1 201 - -
Bda12g00966 206 Pfam Cytidylyltransferase-like 1 172 IPR004821 GO:0003824|GO:0009058
Bda12g00966 206 SUPERFAMILY Nucleotidylyl transferase 2 202 - -
Bda12g00966 206 PANTHER NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE 1 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00966 K06210 NMNAT; nicotinamide mononucleotide adenylyltransferase [EC:2.7.7.1 2.7.7.18] - csv:101222585 328.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00975 Bda-Chr6:30384571 Bda12g00966 Bda-Chr12:40840293 9.87E-89 dispersed
Bda06g00979 Bda-Chr6:30464053 Bda12g00966 Bda-Chr12:40840293 5.45E-134 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g674 . . . . Bpe09g00125 . . Bma13g01117 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1223 Cone15ag1244 . Csa03g00424 . Cme06g02770 . . . Bda12g00966 . . . . . . . . . . . Cpe14g00786 . Bhi11g00477 . . . . . . . . . . . . . . . Chy06g01889 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004688 3 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 2 5 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00966 Bda_Chr12 FPKM 4.678257 5.283955 18.569963 18.355921 8.011588 8.759512 8.111214 19.728371 18.073656