Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00970 ATGGTCGGCCGCTCTCGCGTGCTCTCTCACGTCTTCTCTCTCTTTCCTTCACCACCGTCCGCTTCGCCCACCGACGCGTCCTTCCCCCTTAAAAACGTCACCAAATCGAACTTCGCATCCGCTCTAGCGGAGCTCAGGCATCATGTCAAGGCTGCGGATTTTGTCGCTATTGACCTTGAAATGACAGGGATCACCAGCGCCCCTTGGCGTGAGTCCTTTGAGTTCGATCGGTTTGACGTTCGGTATTTCAAGCTCAAAGACTCAGCTGAGAAGTTCGCCGTCGTTCAATTAGGTGTCTGCCCATTTCGTTGGGATCAATCCAAGCAGTCCTTCATTGCCCATCCGCATAATTTCTATGTTTTTCCACGTCAAGAGCTTAAAGTTGATGGTCCTTCTCAGGAGTTCCTCTGTCAAGCTTCTTCCATTGACTTCTTGGCAAAGTACCAGTTTGATTTCAATCTATGCATACGTGAAGGAATATCATATTTATCCAGAGCGCAAGAAGAGGAAGCGCTTAGGTGTATTAATTTGAGATATAAAAATGAGTTGTCAGATAATGTGAAGGACTTCAGAGATGAGGAAATTGGCAATATTGTTGATCTTCTGTTCAGTGAACGAATGAAAAACAGATTCAGTGAATGGCGTAATGGTTTATTGGAGAGAAGAAATGAAGAGGGCCAATTTATGGAGGCATCAAATGGCTTGAAACGACCACTTGAAACCATTTTCTTCAAGATGCGTCCAGCTATTTGTTTGAATGGCTTCACTTCTCATCAGCAGAGGTTGATCAAGTTGGTGATTAGAAAGTATTTTGATGATCTTGCTTATGTTCGTGTTAACAGAGAGAATGAACATTCACAACAACTAGTCGTCTATACAGACTCCAATAGTGATAGAGACTCCCTTATGGAAGAGGTCAGGGATGAACACCTGAGAGTAGAAAAAATGAGAATACAAAGTGCCATAGGGATTCGCCACGTTATTGATCTCCTTTTGACTGAGCAAAAATTGATTGTTGGTCATAATTGCTTTCTCGATATTGCACACATATTCGGCAAGTTCAATGGCTCTCTTCCTTCTACTGTGGAAGAATTTGTATCCTCTGTTAGCAAATATTTAAAATACATAGTTGACACCAAATTGCTACTGAATGTTAATGATGTACTTCAGCAACGGATGAAAAAGTCGAGCACATCACTCTCATCTGCATTTGCCTTATTATGTCCACAATTTGCGCTTGGCTCGAAAAGTACTGGTCTAGCATTGAACTCCTGTATGCAAGTGGAGGTTCAAGTAGATGATTTGAGGTCGTCCAACTGGAATTCTGGTGCAAAGCACGAAGCTGGGTATGATGCATTCATGACTGGATGTGTCTTTGCCCAAGCATGTAGTCATCTAGGAGTTGGTTTCAAACTCCATTCATCTTCTGAAAATTTAGCTCTCAATGAAAAGCTCCAGAAGTACGTCAATCATCTCTATCTCAGCGGATCAAACTCTGAAATCATCGAACTAAGTACTGGTAAAAGGGTTACTGAGTCTTTGACGTGTTATAACTCCAAAAGGTATCATTCAAGGATATCATTCGAGAAAGTTGTTTTAATCTGGGGATTTTCCTCTAAATTGTCGCCAAGGAAGATTAAAGAATGCCTCTGTAAAGTTTTTGGCTCAACAGCTGTCACATGTATATTCCAATTAGAAGAAACTACTGTATTTGTACAATTCAGCAAGAGCAACTTGGTATCAGACTTTCTCCGTCTCAAAAAGTCGTTAGAAACTCAGAAGGATGCAATCGCAGTATTGCATCCTCTTGCAGACGTTTTGAGCGGCGGACGAACTCGTGCTGCAGATTATGAAACTTATAAAGACATTTGCAGTTCACCCATTTCGAAAACCTTGTTTGCAGATCAGGCCGAGGCAGTGGGTTTTAAAGAATACACAGAGCTTTTGCAAACAAACGTCGAGAGGGAAGAGCAAGAGGTTATCAGCTCAGACAAAACAGGAGATGATTTAATTCCAGAGAAGTGCAGGGATTGGAAAGCACACAATGGGAAGGATGATGCCAGCCGTGTTCAATATGAAATCTTGCAATCTATTTGTGCTGCTGACGGCAACTGA 2115 42.13 MVGRSRVLSHVFSLFPSPPSASPTDASFPLKNVTKSNFASALAELRHHVKAADFVAIDLEMTGITSAPWRESFEFDRFDVRYFKLKDSAEKFAVVQLGVCPFRWDQSKQSFIAHPHNFYVFPRQELKVDGPSQEFLCQASSIDFLAKYQFDFNLCIREGISYLSRAQEEEALRCINLRYKNELSDNVKDFRDEEIGNIVDLLFSERMKNRFSEWRNGLLERRNEEGQFMEASNGLKRPLETIFFKMRPAICLNGFTSHQQRLIKLVIRKYFDDLAYVRVNRENEHSQQLVVYTDSNSDRDSLMEEVRDEHLRVEKMRIQSAIGIRHVIDLLLTEQKLIVGHNCFLDIAHIFGKFNGSLPSTVEEFVSSVSKYLKYIVDTKLLLNVNDVLQQRMKKSSTSLSSAFALLCPQFALGSKSTGLALNSCMQVEVQVDDLRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGVGFKLHSSSENLALNEKLQKYVNHLYLSGSNSEIIELSTGKRVTESLTCYNSKRYHSRISFEKVVLIWGFSSKLSPRKIKECLCKVFGSTAVTCIFQLEETTVFVQFSKSNLVSDFLRLKKSLETQKDAIAVLHPLADVLSGGRTRAADYETYKDICSSPISKTLFADQAEAVGFKEYTELLQTNVEREEQEVISSDKTGDDLIPEKCRDWKAHNGKDDASRVQYEILQSICAADGN 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40864764 40868440 - Bda009517.1 Bda12g00970 17985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00970 704 Gene3D - 277 508 IPR036397 GO:0003676
Bda12g00970 704 Pfam CAF1 family ribonuclease 33 459 IPR006941 -
Bda12g00970 704 Gene3D - 32 257 IPR036397 GO:0003676
Bda12g00970 704 SUPERFAMILY Ribonuclease H-like 30 470 IPR012337 -
Bda12g00970 704 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 28 643 - -
Bda12g00970 704 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 28 643 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00970 K01148 PARN, PNLDC1; poly(A)-specific ribonuclease [EC:3.1.13.4] - jre:108994530 863.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00977 Bda-Chr6:30409030 Bda12g00970 Bda-Chr12:40864764 0 dispersed
Bda10g00458 Bda-Chr10:37470027 Bda12g00970 Bda-Chr12:40864764 3.23E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g677 . . . . Bpe09g00121 . . Bma13g01121 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1229 Cone15ag1253 . Csa03g00422 . Cme06g02768 . . . Bda12g00970 . . . . . . . . . . . Cpe14g00784 . Bhi11g00474 . . . . . . . . . . . . . . . Chy06g01891 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009803 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00970 Bda_Chr12 FPKM 18.446062 20.575897 15.601609 16.465414 28.770504 24.196222 27.451908 31.214106 29.917702