Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00972 GAGAAAGACGGTATGGGTGTGAATGATCGGAAAAATGCTACAGACTCGCCAAACCCAAAGCCTGAGGTTGGAGAAATAGACACAAGTGCGCCATTCCAATCCGTAAAAGATGCCCTTTCTTTGTTTGGTGTTGGGGCCTTTTCAGGAGAAAAAAGAGTGTTGGCAAAAGAGTCCCAACTCCACGTAGCAGAGAGAGAATTGAACAAGTTAAAAGAGCAGCTAAAAAATGCGGAAACTACAAAAGCTAAAACACTTGTGGAGCTAGAAAAGGCTAAAAGAACTGTTGAAGATCTAAACTATAAGTTGAAGTCCCTTATTGAATCGAAAGAATCTGCAATCGAGATAACAGAGAAGGCTAAATCTCAAGCGAAGCAGCTTGGGGAGGCGAATGGAAGCAAAATCGGTGAAATCGAAGGCTCTAGGAAAGAAGACATGGATACTGCAAGGAATCAATACACGTCGGTGATTTCCGAGCTGGATGCTGCCAAGAAAGAACTACGGAGGATCCGTCAAGAATCTGATGCTTCTTTGGAAGCTAAAGTTACTGCCTTGAAACAAACTGCAGATGCTGAATCTGTGGCTAAAGTCCACAAAGAGAGAGCTAATGATCTTTCCAAGGAGATTTTAGTTGTGCAAGAGTCGATTGAGCAGCTGAAACTTGCTTCCTTGGGGGCCCAGAAAAAGCAAGAAATGCTATTAGCCGAAAAGGATGCTATGAGGCAGTCATACAAAGTAAGCGTTGAAGAGTCTGCCGAGAAGTTGAGGGCTTTGAAGAAAGAGTTTGATCCCAAAGTTGCCCAAAATCTTGACTCACAGCTGGCTGAAACGATGAATGAAATAGGGGTTCTCCAAAAGCAAATGGAAGAAACAAAAGCTTTGGATTTGAATTCAGTGAAGGCAGTCACTCTGGAACTGGATGATGCAAAAGCGTCTCTTCAGAAAGTTTTGGAAGAGGAAAGATCCCTTCGCAGCTCAGTGGAAGCTCTTAAATTGGATTTAGAAGCTGTAAAAAAAGAGCATGCTGAGCTGAAGGAGAAGGAAGCCGAAACAGAATCCATTGCTGGTAATTTACATGTTAAGCTCCGGAAGAGCAAGTTGGAGCTCGAATTATTCATTGCAGAAGAATCTAAAACAAGAGGTGCCTGTGAGGAAATGATCTTGACTCTTAATCAGTTGTCATCAGAAACCGAAAACGCCCGAAGAGAAGCGGATGCAATGAAAAACAAATCTGAAGAATTGAGGAAGGAAGCTCAGTCCATCAAAATTGCATTAGAGGAGGCTGAGCAGACGCTAAGAGTTGCTCTGGAGGAAGCCGAAGAGGCCAAAGCAGCCGAGGTAAAGGCCCTTGATCAGATTAAGGTCCTTTCTGAAACGACAACTGCAGCTCGGGCCTCAATTTCCGAATCTGGTGCAAAAATCACAATCTCAAGGGAAGAGTTCGAGTCTTTGAGCCGTAAAGTTGGAGAGTCTGACACACTGACTGAAATGAAGGTGGCTGCAGCTCTGGCTCAGGTAGAAGCCGTAAAGGCCAGTGAAAATGAGGCTCTCAAGAAGTTGGAAACAATTCAAAAGGAGATTGAGGACATGAAGAAGGCAACGAATGAGGCATTGAAGAGAGCTGATATGGCTGAAGCAGCCAAAAGGGCAGTGGAGGGAGAGCTCCGAAGGTGGCGAGAACGAGAGCAAAAGAAGGCAGCCGAAACTGCGTCACAAATATTGGCAGCAACTGAGATGTCCTCAGAACCATCATCACACCTTTACAGGATCCAAACCCAGAAATCCCCGGCAAAAATTATTGAAACCCGAAAATTGGAAAAAGAGAAAACCTTCTTGAAGAAAGCTCTTTTACCAAATCTCAGCGGCATTTTTCAGCGGAAGAAGAATCAGGTCGATGGCGGGTCACCCTCTTACCTGCCTGGAGAGAAGCCTGTATGA 1935 44.6 EKDGMGVNDRKNATDSPNPKPEVGEIDTSAPFQSVKDALSLFGVGAFSGEKRVLAKESQLHVAERELNKLKEQLKNAETTKAKTLVELEKAKRTVEDLNYKLKSLIESKESAIEITEKAKSQAKQLGEANGSKIGEIEGSRKEDMDTARNQYTSVISELDAAKKELRRIRQESDASLEAKVTALKQTADAESVAKVHKERANDLSKEILVVQESIEQLKLASLGAQKKQEMLLAEKDAMRQSYKVSVEESAEKLRALKKEFDPKVAQNLDSQLAETMNEIGVLQKQMEETKALDLNSVKAVTLELDDAKASLQKVLEEERSLRSSVEALKLDLEAVKKEHAELKEKEAETESIAGNLHVKLRKSKLELELFIAEESKTRGACEEMILTLNQLSSETENARREADAMKNKSEELRKEAQSIKIALEEAEQTLRVALEEAEEAKAAEVKALDQIKVLSETTTAARASISESGAKITISREEFESLSRKVGESDTLTEMKVAAALAQVEAVKASENEALKKLETIQKEIEDMKKATNEALKRADMAEAAKRAVEGELRRWREREQKKAAETASQILAATEMSSEPSSHLYRIQTQKSPAKIIETRKLEKEKTFLKKALLPNLSGIFQRKKNQVDGGSPSYLPGEKPV 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40890000 40892130 + Bda009519.1 Bda12g00972 17987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00972 644 Coils Coil 53 108 - -
Bda12g00972 644 Coils Coil 502 560 - -
Bda12g00972 644 Pfam Weak chloroplast movement under blue light 25 563 IPR008545 -
Bda12g00972 644 Coils Coil 145 179 - -
Bda12g00972 644 Coils Coil 266 293 - -
Bda12g00972 644 MobiDBLite consensus disorder prediction 622 644 - -
Bda12g00972 644 Coils Coil 240 260 - -
Bda12g00972 644 MobiDBLite consensus disorder prediction 121 146 - -
Bda12g00972 644 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 8 621 - -
Bda12g00972 644 Coils Coil 298 353 - -
Bda12g00972 644 Coils Coil 382 455 - -
Bda12g00972 644 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED 8 621 - -
Bda12g00972 644 Coils Coil 201 221 - -
Bda12g00972 644 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00972 - - - zju:107433951 804.283
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00043 Bda-Chr10:956821 Bda12g00972 Bda-Chr12:40890000 2.11E-98 dispersed
Bda12g00972 Bda-Chr12:40890000 Bda14g01120 Bda-Chr14:10186880 4.87E-11 dispersed
Bda12g00972 Bda-Chr12:40890000 Bda12g00247 Bda-Chr12:2590685 4.35E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g687 . . . . Bpe09g00119 . . . . Cmo06g00678 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1256 Cone15ag1278 . Csa03g00417 . . . Blo10g00872 . Bda12g00972 . . . . . . . . . . . Cpe14g00781 . Bhi11g00468 . . . . . . . . . . . . . . . Chy06g01895 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005145 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 6 2 1 1 1 1 1 1 1 0 4 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00972 Bda_Chr12 FPKM 0.167318 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0