Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00977 ATGGAAGAATCTGAAGAAATTCTTCTGAATTCGCTTCAGAGATGCGGGGTTTCGTTACCCACCAGTTTATCGTCCATCCGAGATATTACTGCCTCCACCTTGGTCTCCATCTGTGCTCAAGCTTTGAATCTTATTGAAGAGAACAGAACCGAATTATTGTCGGTTTCTCTGCCGAGCTCCGTCGCTGACCAGATTAAGATTTGTACGAGCATCGCCGCCGCGATTAAGGGTTTGGGTCACATCGGAGACTTGAGCTTCCACAAGTTGTTATATCCATCTGAAGAGGATTTGTATAAGGTGATTAGATTCTTAGTGGAGAGACTCTCCGAAGCATCACAAAACAGAAGCAATGCTGCCTTTAACGATCTGATCGAAAACCAAGACGTTGCAAGAGGAAATGCGAAATTCCCTGACAAGGGCGATGATCATGAGTTGGATTTTAACCATCGGAAAGTCGTGGATCAGTTCTCAGATCTCAGAGTGACAAATGAAGTGACCGATTGTTCGAATAACAATGTAGAAACTATGCAGAATTTCTCCGAGGATCAATCAATTAGAGAACCCAAAGAAAGGGTCAAACTTCATTTTGAAAATCCCAAATTCGATAGTCGCAATTGTAAGTTGAGGGATGGAATAATAATACTACAAAATCAAGAAAGAGTTCTTATGGGAGAAATCTCTGCAAAGAGTCTAGAACTGCAAAATCTTGATAAGGAGTTGGCATTGCTGAAGGAAGTAGAGCATATGGCATTTGACGAAACTCGTTCCATTGACTTCTACCTGAAGCAGCTCGAAGAGCAATTGGACGATAAAAAGCTCGATCTTCAGGAATTGAAGTCGGAATGGTATATATCGGTCACCGAGAGGGAGATATTGGAAAAGAAAAAATTGGATATAGAAGAGTTGCTCTATGCCAATAATCCAGGGGTCCGAGAGAAATACCGAGAATTGAGGGAGGTTGAACGGGAAAAAGATTTTGTTTTGTCGGAAATAAGGAGAAGGGAGGAGGAAGTATTGAAACTTTCTGCAGATCTTGAGGGGCAGCCTAAACAATCCTCTCGAAGTTCTTACGTTGATCGGGTAAAGGAGATAACGAAAAATAGTCGAAAGCAAGATGTCGATATTGAGCAGATTCTTAAGAGAACACGAGAACTTCAACTGGAAAGCAATTTGATCCAAGAACGCCTTCATCGAAGCCACGCAGTGGTGGAAGAATTATTTTCCAGAAAGGCGAGGAAGGATCCATTTTGGAGGCAAGCTTATCGGCTTCTTTCGAGCATCCACGAGGGTTTCGAACAAATATCTGAGAAAATTCTCGCTACCGATAGAATACGAAGAGAAGCTGCAGAGCATGAAAAGAAGTTGGCGGCATTGGCTACCAGAAGATTATCTATCGAGAAACTCGAAGCCGATCTCGATGCTATTAGGAGGGAAAATAGTATCCTTGAGCAGAACAACTCTTCAGCATCTTGA 1473 42.36 MEESEEILLNSLQRCGVSLPTSLSSIRDITASTLVSICAQALNLIEENRTELLSVSLPSSVADQIKICTSIAAAIKGLGHIGDLSFHKLLYPSEEDLYKVIRFLVERLSEASQNRSNAAFNDLIENQDVARGNAKFPDKGDDHELDFNHRKVVDQFSDLRVTNEVTDCSNNNVETMQNFSEDQSIREPKERVKLHFENPKFDSRNCKLRDGIIILQNQERVLMGEISAKSLELQNLDKELALLKEVEHMAFDETRSIDFYLKQLEEQLDDKKLDLQELKSEWYISVTEREILEKKKLDIEELLYANNPGVREKYRELREVEREKDFVLSEIRRREEEVLKLSADLEGQPKQSSRSSYVDRVKEITKNSRKQDVDIEQILKRTRELQLESNLIQERLHRSHAVVEELFSRKARKDPFWRQAYRLLSSIHEGFEQISEKILATDRIRREAAEHEKKLAALATRRLSIEKLEADLDAIRRENSILEQNNSSAS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40920221 40922655 - Bda009523.1 Bda12g00977 17992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00977 490 Coils Coil 261 281 - -
Bda12g00977 490 Coils Coil 310 337 - -
Bda12g00977 490 Coils Coil 441 490 - -
Bda12g00977 490 Coils Coil 226 246 - -
Bda12g00977 490 Pfam Coiled-coil domain-containing protein 22 1 116 IPR008530 -
Bda12g00977 490 Pfam Coiled-coil domain-containing protein 22 116 459 IPR008530 -
Bda12g00977 490 PANTHER JM1 PROTEIN 155 485 IPR008530 -
Bda12g00977 490 PANTHER JM1 PROTEIN 1 118 IPR008530 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00977 K23343 CCDC22; coiled-coil domain-containing protein 22 - vvi:100248115 420.239
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g709 . . . . Bpe09g00115 . . Bma13g01126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00412 . Cme06g02760 . . . Bda12g00977 . . . . . . . . . . . Cpe14g00777 . Bhi11g00457 . . . . . . . . . . . . . . . Chy06g01900 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009968 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00977 Bda_Chr12 FPKM 15.29415 15.501021 12.743537 13.440797 19.736084 21.538847 21.295725 17.618088 18.129454