Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00980 ATGAATACCCATCATTTTCCCGGCCCTGGTTTACTGTATAATTCCAGCGTTTTATCAAATCCTCCAGCCATTGATCATCACAGAGCTCGAGCCTTAACTTCTTCGTTCTGGATCAGATTGGCAGTAAAAATATCTCGGGCAAGATGGTTCAATTTCTTGAGAAGAGTATTCCACTACCAAAATGGTTCGAGATCCGATCTCGGGTCGAATCCTTTAAACTCCAGCACTTGGATGATGCTGGAGCTTATAGCTTTGTTTCTTCAACTAAGCATTTCCACATTCATCTTGGCCATTTCAAAGAGAGAGAAGCCAGTTTGGCCTATGAGAGTATGGATTATTGGTTATAACATTAGCTGTTTCCTGAGTCTGTTGCTACTTTATGGTCGTCATAGGCGGCTTCGTCTGACTCAAACCGATGATTTCAACCTTTTGGATATCGAGCAGCAGAGGAGTAGCGAAGAATCCAGGATGTTGCATTTGATGAACAAATGTTGTACGACATTGGAGCTATTTTTCGCTATATGGTTCGTTATGGGCAATGTTTGGGTGTTTGATTCTCGATTCGAGTCTTTCCCGATGGCCCCGAAGCTTCATGTTCTTTGCATCTCTCTCCTGGCTTGGAATGCCATTTGCTATTCTTTCCCTTTCCTTCTCTTCCTTCTGCTCTGCTGTTGTGTGCCATTGATTAGTACCCTTCTTGGCTACAACATGAATATGGGCTCCATCGATAGAGGAGCTTCCGACGATCAACTTTCCCGGCTTTTGAGCTGGCGATACAAATCGGGAGATTCCAAATCGGAGCTCAGAATCATTCCTACCGAAGATCCAGAATGTTGTATTTGCCTTGCGAAGTATAGAGACCGGGAAGAAATCCGGGAGTTGCCGTGTTCGCATGTTTTTCATCTCAACTGTGTGGATCAATGGCTTAGAATTATATCAATTTGTCCTCTTTGCAAGCAAGAACTAGAGAGATAA 975 43.49 MNTHHFPGPGLLYNSSVLSNPPAIDHHRARALTSSFWIRLAVKISRARWFNFLRRVFHYQNGSRSDLGSNPLNSSTWMMLELIALFLQLSISTFILAISKREKPVWPMRVWIIGYNISCFLSLLLLYGRHRRLRLTQTDDFNLLDIEQQRSSEESRMLHLMNKCCTTLELFFAIWFVMGNVWVFDSRFESFPMAPKLHVLCISLLAWNAICYSFPFLLFLLLCCCVPLISTLLGYNMNMGSIDRGASDDQLSRLLSWRYKSGDSKSELRIIPTEDPECCICLAKYRDREEIRELPCSHVFHLNCVDQWLRIISICPLCKQELER 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40942561 40944064 + Bda009526.1 Bda12g00980 17995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00980 324 ProSiteProfiles Zinc finger RING-type profile. 278 319 IPR001841 -
Bda12g00980 324 SMART ring_2 278 318 IPR001841 -
Bda12g00980 324 SUPERFAMILY RING/U-box 269 322 - -
Bda12g00980 324 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 323 - -
Bda12g00980 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 323 IPR013083 -
Bda12g00980 324 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 23 323 - -
Bda12g00980 324 Pfam Ring finger domain 277 319 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda07g00422 Bda12g00980 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00980 Bda-Chr12:40942561 Bda13g01283 Bda-Chr13:35146003 1.99E-55 dispersed
Bda12g00980 Bda-Chr12:40942561 Bda07g00422 Bda-Chr7:5413694 6.48E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00980 - - jre:108994791 471.47