Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00984 ATGGCGGAGCAAGAGACGTTCGCTTTCCAGGCCGAGATCAATCAGCTGCTAAGCTTGATCATTAACACTTTCTACAGTAACAAGGAGATCTTTCTCCGTGAACTCATTAGCAATGCATCGGATGCGCTGGACAAGATTAGGTTTGAGAGTTTGACAGACAAGAGCAAGCTAGATTCTCAAAATGAACTTTTCATTCACATAGTACCTGACAAGACAAACAACTCACTATCTATCATAGACAGTGGTATTGGCATGACAAAAGCTGATTTGGTAAACAATTTGGGAACAATTGCGAGGTCTGGAACAAAGGAATTCATGGAAGCTCTTGCTGCTGGGGCTGATGTGAGTATGATTGGACAGTTTGGTGTTGGTTTCTACTCAGCGTACCTTGTGGCTGAGAAGGTCATTGTCACCACAAAGCACAATGATGATGAACAATATGTTTGGGAATCCCAAGCTGGAGGATCATTCACTGTAACCAGGGATTCTTCGGGTGAAAATCTTGGCAGGGGTACTAAGATAACTTTATATCTGAAGGAGGATCAACTTGAATATCTCGAGGAGCGCCGTGTGAAGGACTTAATTAAGAAGCACTCTGAGTTCATTAGCTACCCTATCTCTCTCTGGACTGAGAAGACCACTGAAAAAGAGATCTCTGATGATGAGGATGAGGAAGATAAGAAGGAAGAGGAAGGAAAGATTGAGGAGGTAGATGAAGAGAAGGAAAAGGAAGAAAAGAAGAAGAAGAAGATCAAGGAGGTATCATACGAGTGGTCTTTGGTCAACAAGCAGAAGCCCATTTGGATGCGGAAACCTGAAGAAATCACAAAGGAGGAGTATGCTGCATTCTACAAGAGCCTTACCAATGATTGGGAGGAGCACCTTGCGGTAAAGCACTTTTCGGTTGAGGGTCAACTGGAATTTAAGGCTGTTCTCTTTGTTCCTAAGAGGGCCCCATTTGACCTGTTCGACACGAAAAAGAAGCCCAATAACATCAAGCTCTATGTTCGCCGAGTCTTTATCATGGACAACTGTGAGGAACTGATTCCGGAGTATCTTGGTTTTGTTAAGGGCATTGTGGATTCTGAGGATCTGCCTTTGAACATATCTAGAGAAATGCTACAGCAGAACAAGATTCTGAAGGTAATTAGAAAGAACTTGGTTAAAAAGTGCATTGAGCTCTTCTTTGAAATTGCAGAGAACAAGGAAGATTACAACAAGTTCTACGAATCATTCTCTAAAAACTTGAAGCTTGGAATCCACGAGGACTCCACCAACAAGGCAAAGATAGCTGAGCTACTTAGATACCACTCCACCAAGAGTGGTGATGAAATGACCAGCCTGAAGGATTATGTGACCAGAATGAAGGAGGGTCAGGATGACATCTATTACATTACTGGTGAGAGCAAGAAGGCCGTTGAGAATTCTCCTTTCCTTGAGAAGCTAAAGAAAAAGGGTTATGAAGTTCTCTACATGGTGGATGCCATTGATGAGTACGCAATTGGACAGCTCAAAGAATTTGAGGGCAAGAAGCTTGTCTCTGCAACAAAAGAGGGTCTAAAACTCGAAGAGACTGAGGATGAGAAGAAGAAGAAGGAAACGCTGAAGGAGAAGTTTTCGGGTCTGTGCAGTGTGATCAAGGAAGTGTTGGGTGACAAAATAGAGAAGGTCGTAGTTTCCGATAGAGTTGTCGACTCTCCCTGCTGTTTGGTTACAGGTGAGTATGGATGGACGGCAAACATGGAGAGGATCATGAAGGCTCAGGCACTGAGAGATAGCAGCATGTCCGGGTATATGTCGAGCAAGAAAACTATGGAGATAAACCCAGAGAATCCCATCATGGAGGAGTTGAGAAAGAGAGCTGATGCCGACAAGAACGACAAATCAGTGAAGGACCTTGTCCTTCTTCTCTTTGAGACCTCCCTTCTTACCTCAGGGTTTAGCCTTGATGACCCCAACACCTTCGGCAACAGGATCCATAGGATGTTAAAGCTCGGCCTGAGCATCGACGACGATACTGCTGATGGAGATGACGATGCAGATATGCCACCATTGGAGGATGCAGATGCCGAAGCAGAGGGCAGCAAGATGGAAGAAGTTGACTAA 2106 44.25 MAEQETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDSQNELFIHIVPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDSSGENLGRGTKITLYLKEDQLEYLEERRVKDLIKKHSEFISYPISLWTEKTTEKEISDDEDEEDKKEEEGKIEEVDEEKEKEEKKKKKIKEVSYEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCIELFFEIAENKEDYNKFYESFSKNLKLGIHEDSTNKAKIAELLRYHSTKSGDEMTSLKDYVTRMKEGQDDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLKLEETEDEKKKKETLKEKFSGLCSVIKEVLGDKIEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLLLFETSLLTSGFSLDDPNTFGNRIHRMLKLGLSIDDDTADGDDDADMPPLEDADAEAEGSKMEEVD 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40972661 40975386 - Bda009531.1 Bda12g00984 17999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00984 701 MobiDBLite consensus disorder prediction 217 238 - -
Bda12g00984 701 MobiDBLite consensus disorder prediction 672 701 - -
Bda12g00984 701 Gene3D - 262 430 - -
Bda12g00984 701 MobiDBLite consensus disorder prediction 671 701 - -
Bda12g00984 701 CDD HATPase_Hsp90-like 14 202 - -
Bda12g00984 701 SMART HKATPase_4 27 182 IPR003594 -
Bda12g00984 701 SUPERFAMILY Ribosomal protein S5 domain 2-like 263 518 IPR020568 -
Bda12g00984 701 MobiDBLite consensus disorder prediction 214 242 - -
Bda12g00984 701 PANTHER HEAT SHOCK PROTEIN 81-2 1 699 - -
Bda12g00984 701 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 181 IPR003594 -
Bda12g00984 701 Hamap Chaperone protein HtpG [htpG]. 2 664 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bda12g00984 701 Gene3D - 431 517 - -
Bda12g00984 701 Gene3D - 518 668 IPR037196 -
Bda12g00984 701 SUPERFAMILY HSP90 C-terminal domain 542 663 IPR037196 -
Bda12g00984 701 Coils Coil 211 257 - -
Bda12g00984 701 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Bda12g00984 701 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Bda12g00984 701 PRINTS 90kDa heat shock protein signature 188 206 IPR020575 -
Bda12g00984 701 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Bda12g00984 701 PRINTS 90kDa heat shock protein signature 170 187 IPR020575 -
Bda12g00984 701 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Bda12g00984 701 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Bda12g00984 701 Gene3D - 2 228 IPR036890 -
Bda12g00984 701 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 699 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bda12g00984 701 PIRSF HSP90_HTPG 1 701 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bda12g00984 701 Pfam Hsp90 protein 184 685 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bda12g00984 701 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524|GO:0006457|GO:0051082
Bda12g00984 701 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4 213 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00984 K04079 HSP90A, htpG; molecular chaperone HtpG - sind:105176572 1178.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00671 Bda12g00984 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01534 Bda-Chr1:51284244 Bda12g00984 Bda-Chr12:40972661 0 dispersed
Bda04g01289 Bda-Chr4:63385884 Bda12g00984 Bda-Chr12:40972661 3.67E-140 dispersed
Bda01g02114 Bda-Chr1:57183583 Bda12g00984 Bda-Chr12:40972661 0 transposed
Bda15g00711 Bda-Chr15:10518789 Bda12g00984 Bda-Chr12:40972661 0 transposed
Bda12g00984 Bda-Chr12:40972661 Bda05g00671 Bda-Chr5:55026059 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g722 . . . . Bpe09g00109 Bpe08g01086 . . Cmo16g01031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00880 Bda05g00671 Bda12g00984 . Bpe03g00745 Bma07g01240 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00984 Bda_Chr12 FPKM 0.304245 0.594706 0.268648 0.15312 0.160506 0.332735 0.205797 0.841588 0.749319