Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00986 ATGCTACCACGCCCTCTGATCAGAACACGGCATTCACATAGCTATTACAGCAACCCAAACTGTGTCAGATGTGATCTTGGAACTTGCACTGGCACGAAGCTTGCTTCCGGTTCTGTTGATCAAACAGCTCGAGTTTGGCATATTGAGCCGCACGGACATAGTAAAGTTAAGGATATTGAGTTAAAAGGGCACACAGACAGTGTAGATCAGTTATGTTGGGATCCCAAACATGCTGATCTTATTGCAACTGCTTCGGGTGACAAGACTGTTCGTCTGTGGGATGCTCGTAGTGGGAAATGCTCTCAGCAATCAGAACTTAGTGGAGAGAATATTAATATCACATATAAACCTGATGGAACACATGTGGCTGTCGGCAATAGGGATGATGAATTAACAATACTGGATGTTAGAAAATTTAAGCCAATTCACAAGCGCAAGTTCAATTATGAGGTTAATGAGATTGCTTGGAACATGACAGGAGAGATATTTTTCCTGACCACGGGAAATGGTACCGTTGAGGTTCTAGCTTACCCTTCTCTGCAACCACTTGACACCCTGATGGCTCATACAGCTGGTTGTTATTGCATTGCGATAGACCCAGTGGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCTTAGTCAAGCTGTGGGTTTTTGACATCCTTTTTTGCCTACATCTTTTGCATAAGACATCATCAAACATACGAAATTTCTCTTTTAATGGAGTTCATGAGTCCATTGCTTATGTCTCATACTTTAAGTTCATAGAGAAGGAGAAGATAAAACTAGGCCGATCGATCGCCCAAGATTCTTGTGTTTCCTCACTAGGAATACAAGAGAACACAATCAAGGTAGTTTCACTCCCTCACTATTTAGATGAACAAGAATATTGTAACGCTCCGGACTGGTCGTCCCGATCGATCGCTCAGAAAACCGCGATCGATCGGCAGAGCCTCTTAAACAATGGGTTACCTCCCACCAAGTGCTTGATTTAA 996 42.87 MLPRPLIRTRHSHSYYSNPNCVRCDLGTCTGTKLASGSVDQTARVWHIEPHGHSKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQSELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEIFFLTTGNGTVEVLAYPSLQPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVKLWVFDILFCLHLLHKTSSNIRNFSFNGVHESIAYVSYFKFIEKEKIKLGRSIAQDSCVSSLGIQENTIKVVSLPHYLDEQEYCNAPDWSSRSIAQKTAIDRQSLLNNGLPPTKCLI 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41186398 41199527 - Bda033190 Bda12g00986 18001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00986 331 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Bda12g00986 331 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Bda12g00986 331 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Bda12g00986 331 SMART WD40_4 54 94 IPR001680 GO:0005515
Bda12g00986 331 SMART WD40_4 3 47 IPR001680 GO:0005515
Bda12g00986 331 SMART WD40_4 138 176 IPR001680 GO:0005515
Bda12g00986 331 SMART WD40_4 179 218 IPR001680 GO:0005515
Bda12g00986 331 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 217 IPR001680 GO:0005515
Bda12g00986 331 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 217 - -
Bda12g00986 331 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Bda12g00986 331 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Bda12g00986 331 Gene3D - 9 145 IPR015943 GO:0005515
Bda12g00986 331 SUPERFAMILY WD40 repeat-like 10 251 IPR036322 GO:0005515
Bda12g00986 331 Gene3D - 146 289 IPR015943 GO:0005515
Bda12g00986 331 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Bda12g00986 331 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Bda12g00986 331 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Bda12g00986 331 PANTHER THO COMPLEX SUBUNIT 3 THO3 28 272 IPR040132 GO:0006406
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00986 K12880 THOC3; THO complex subunit 3 - egr:104449080 412.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00986 Bda-Chr12:41186398 Bda15g00066 Bda-Chr15:2339049 2.14E-15 dispersed
Bda12g00986 Bda-Chr12:41186398 Bda08g00926 Bda-Chr8:17053550 3.08E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g735 . . . . . . . Bma13g01140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00986 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00518 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011335 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30