Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00989 ATGGCCCAAGAGGCCGGAATGTTTATGGTACACCTAACTATTGGGAGCGTTTTGTGCTGCAAATGTGGCATTCCAATGGCTCCAAATGCTGCAAATATATTTTACAGTTTGAGCTCAGAATATGATATTACAGAAGGTTTGCAAAAGCAAGTAAAAATTTTACATTGTCATGATTGTGAAAGCTACTTGCAGCCTCCAAGAACTTGGATTAAAGCTCGGTTAGAGTCAGCATCTGTGCAACTCCGGCAACATGTATCTAGTCACGGTGTGAAATTTGTCGAATTTCTAGGTAAAGTAGTTCTGACAAGGAGTCGCCATGATAAGCAACTTGTTTCTCATGATGGTCGGTTCGTCTTCTTTAATTTCCAGAGGGAGAACGTGGCAAAACAAGTGCCGGAGCAAAACGGGTTGACCCACTTCGAAGCCGGCGACACCAGAGCCAAAGAGTACGTCAGCCTACTCAAATCAAACGACCCGGTCGGGTTCAACATCGTGGATGTTCTCGCTTGGGGCTCCATCGGCCATATAGTTGCTTACTACATCTTGGCCACCTCTAGCAATGGCTACGATCCGAAGTTCTTCTGA 585 45.3 MAQEAGMFMVHLTIGSVLCCKCGIPMAPNAANIFYSLSSEYDITEGLQKQVKILHCHDCESYLQPPRTWIKARLESASVQLRQHVSSHGVKFVEFLGKVVLTRSRHDKQLVSHDGRFVFFNFQRENVAKQVPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41209416 41214737 + Bda009540.1 Bda12g00989 18004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00989 194 ProSitePatterns Photosystem I psaG and psaK proteins signature. 161 178 IPR000549 GO:0009522|GO:0015979|GO:0016020
Bda12g00989 194 Pfam NMD3 family 19 78 IPR007064 -
Bda12g00989 194 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC 109 194 - -
Bda12g00989 194 Gene3D - 98 194 IPR023618 GO:0009522|GO:0015979
Bda12g00989 194 TIGRFAM PS_I_psaG_plant: photosystem I reaction center subunit V 115 190 IPR017494 GO:0009522|GO:0009535|GO:0015979
Bda12g00989 194 Pfam Photosystem I psaG / psaK 115 189 IPR000549 GO:0009522|GO:0015979|GO:0016020
Bda12g00989 194 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC-RELATED 109 194 IPR016370 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00989 K08905 psaG; photosystem I subunit V - gmx:100305786 167.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00989 Bda-Chr12:41209416 Bda05g00661 Bda-Chr5:54955357 4.80E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g784 . . . . . . . Bma13g01142 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1271 Cone15ag1297 . . . . . Blo10g00889 . Bda12g00989 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011324 1 1 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 2 2 1 1 1 1 1 1 1 0 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00989 Bda_Chr12 FPKM 13.548872 14.545793 23.074594 23.881544 18.006781 17.848648 15.353234 20.18441 21.884783