Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00990 ATGTCTACCTCTCTTAATCAGCATCTATCTGAGAATCCTATAATTGCTGAGAGCCCTCCACCTACTTCGTCTCATCATCAACACCGGCAGGAGCTTCTGAGTGAGAGGCCAAATGGGCCATTACCAGTCTCTACCTCCACTGCCAGCCCCACCAGAACTTACCCTTCTGCTGCTGCTAAGTACGAGGATGTTGCTCAAAGTTCGGAGCTTTTCTGGGAAAAGCTCAAGGGTTTTCATGAATCATTTGGAACTAAATTCGCGGTTCCTACGGTCGGAGGAAAGTCTCTAGATCTACACCGCCTGTTTGTGGAAGTCACCTCTCGCGGCGGCCTTGAAAAGGTTATAAGAGATCGTAGATGGAAGGAACTAATCGGTGTCTTTAACTTCCCAACGACCATTACAAGTGCTTCATTTGTGTTACGGAAGTACTACCTATCGTTACTTTATCACTTCGAGCAGGTCTATTACTTCCAAAAACTGAACATCGCAATGTCTCCTCCTGCCCAAGACGCTGCGAGCAAAACCCGTGAAAATGGATCTAGAAAGGTGAAGAAAGGTGGGATCATGGCCGAGCTGCAAGTTTGTTCAGATCTGCAGATCGGCTCTACGGTGATAGGAACCATAGATGGAAAATTCGATGATGGATATTTAATTACCGTTAACATTGGATCGAAGCAATTTAAAGGTGTGTTATATCATGCACCTGTCACAGTTTCTGAAAATAATCTGGCCTTGTCTACTCGTCGGGGCCGAAAACGATCTAGGCTGGAATCAAGGGATCCGGACCGACCCAAATCAAACAGGAGTGGATACAACTTCTTCTTTGCCGAGCATTATGCGAGGCTGAAACCTTTGTATCACGGGAAAGAGAGGGCTATAAGCAAGAAAATTGGTGTCCTGTGGAACAATCTCACTGAGGCCGAAAAGAAGATATATCAAGAAAAAGGGTTGAAGGACAAGGAAAGATACAGGACAGAAATGCTGGAATACAAATCCTCGAACGCCCCAGCGCCTAAATAG 1020 45.78 MSTSLNQHLSENPIIAESPPPTSSHHQHRQELLSERPNGPLPVSTSTASPTRTYPSAAAKYEDVAQSSELFWEKLKGFHESFGTKFAVPTVGGKSLDLHRLFVEVTSRGGLEKVIRDRRWKELIGVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFQKLNIAMSPPAQDAASKTRENGSRKVKKGGIMAELQVCSDLQIGSTVIGTIDGKFDDGYLITVNIGSKQFKGVLYHAPVTVSENNLALSTRRGRKRSRLESRDPDRPKSNRSGYNFFFAEHYARLKPLYHGKERAISKKIGVLWNNLTEAEKKIYQEKGLKDKERYRTEMLEYKSSNAPAPK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41215928 41219575 + Bda009541.1 Bda12g00990 18005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00990 339 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 264 331 IPR009071 -
Bda12g00990 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 47 335 - -
Bda12g00990 339 CDD ARID_HMGB9-like 67 152 IPR045303 GO:0003677
Bda12g00990 339 MobiDBLite consensus disorder prediction 243 267 - -
Bda12g00990 339 Gene3D - 53 181 IPR036431 GO:0003677
Bda12g00990 339 ProSiteProfiles ARID domain profile. 65 156 IPR001606 GO:0003677
Bda12g00990 339 SMART bright_3 66 157 IPR001606 GO:0003677
Bda12g00990 339 Pfam ARID/BRIGHT DNA binding domain 69 152 IPR001606 GO:0003677
Bda12g00990 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 47 335 - -
Bda12g00990 339 MobiDBLite consensus disorder prediction 39 53 - -
Bda12g00990 339 SMART ARID_2 62 152 - -
Bda12g00990 339 MobiDBLite consensus disorder prediction 246 266 - -
Bda12g00990 339 Pfam HMG (high mobility group) box 264 331 IPR009071 -
Bda12g00990 339 MobiDBLite consensus disorder prediction 1 53 - -
Bda12g00990 339 MobiDBLite consensus disorder prediction 1 27 - -
Bda12g00990 339 Gene3D High mobility group box domain 247 338 IPR036910 -
Bda12g00990 339 SMART hmgende2 263 332 IPR009071 -
Bda12g00990 339 SUPERFAMILY HMG-box 261 333 IPR036910 -
Bda12g00990 339 CDD HMGB-UBF_HMG-box 264 327 - -
Bda12g00990 339 SUPERFAMILY ARID-like 63 163 IPR036431 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00466 Bda-Chr1:31772548 Bda12g00990 Bda-Chr12:41215928 3.37E-77 dispersed
Bda08g00034 Bda-Chr8:290244 Bda12g00990 Bda-Chr12:41215928 6.14E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16822 PF01388 ARID 2.70E-17 CL0123 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00990 - - qsu:111998428 416.387