Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00990 ATGTCTACCTCTCTTAATCAGCATCTATCTGAGAATCCTATAATTGCTGAGAGCCCTCCACCTACTTCGTCTCATCATCAACACCGGCAGGAGCTTCTGAGTGAGAGGCCAAATGGGCCATTACCAGTCTCTACCTCCACTGCCAGCCCCACCAGAACTTACCCTTCTGCTGCTGCTAAGTACGAGGATGTTGCTCAAAGTTCGGAGCTTTTCTGGGAAAAGCTCAAGGGTTTTCATGAATCATTTGGAACTAAATTCGCGGTTCCTACGGTCGGAGGAAAGTCTCTAGATCTACACCGCCTGTTTGTGGAAGTCACCTCTCGCGGCGGCCTTGAAAAGGTTATAAGAGATCGTAGATGGAAGGAACTAATCGGTGTCTTTAACTTCCCAACGACCATTACAAGTGCTTCATTTGTGTTACGGAAGTACTACCTATCGTTACTTTATCACTTCGAGCAGGTCTATTACTTCCAAAAACTGAACATCGCAATGTCTCCTCCTGCCCAAGACGCTGCGAGCAAAACCCGTGAAAATGGATCTAGAAAGGTGAAGAAAGGTGGGATCATGGCCGAGCTGCAAGTTTGTTCAGATCTGCAGATCGGCTCTACGGTGATAGGAACCATAGATGGAAAATTCGATGATGGATATTTAATTACCGTTAACATTGGATCGAAGCAATTTAAAGGTGTGTTATATCATGCACCTGTCACAGTTTCTGAAAATAATCTGGCCTTGTCTACTCGTCGGGGCCGAAAACGATCTAGGCTGGAATCAAGGGATCCGGACCGACCCAAATCAAACAGGAGTGGATACAACTTCTTCTTTGCCGAGCATTATGCGAGGCTGAAACCTTTGTATCACGGGAAAGAGAGGGCTATAAGCAAGAAAATTGGTGTCCTGTGGAACAATCTCACTGAGGCCGAAAAGAAGATATATCAAGAAAAAGGGTTGAAGGACAAGGAAAGATACAGGACAGAAATGCTGGAATACAAATCCTCGAACGCCCCAGCGCCTAAATAG 1020 45.78 MSTSLNQHLSENPIIAESPPPTSSHHQHRQELLSERPNGPLPVSTSTASPTRTYPSAAAKYEDVAQSSELFWEKLKGFHESFGTKFAVPTVGGKSLDLHRLFVEVTSRGGLEKVIRDRRWKELIGVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFQKLNIAMSPPAQDAASKTRENGSRKVKKGGIMAELQVCSDLQIGSTVIGTIDGKFDDGYLITVNIGSKQFKGVLYHAPVTVSENNLALSTRRGRKRSRLESRDPDRPKSNRSGYNFFFAEHYARLKPLYHGKERAISKKIGVLWNNLTEAEKKIYQEKGLKDKERYRTEMLEYKSSNAPAPK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41215928 41219575 + Bda009541.1 Bda12g00990 18005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00990 339 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 264 331 IPR009071 -
Bda12g00990 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 47 335 - -
Bda12g00990 339 CDD ARID_HMGB9-like 67 152 IPR045303 GO:0003677
Bda12g00990 339 MobiDBLite consensus disorder prediction 243 267 - -
Bda12g00990 339 Gene3D - 53 181 IPR036431 GO:0003677
Bda12g00990 339 ProSiteProfiles ARID domain profile. 65 156 IPR001606 GO:0003677
Bda12g00990 339 SMART bright_3 66 157 IPR001606 GO:0003677
Bda12g00990 339 Pfam ARID/BRIGHT DNA binding domain 69 152 IPR001606 GO:0003677
Bda12g00990 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 47 335 - -
Bda12g00990 339 MobiDBLite consensus disorder prediction 39 53 - -
Bda12g00990 339 SMART ARID_2 62 152 - -
Bda12g00990 339 MobiDBLite consensus disorder prediction 246 266 - -
Bda12g00990 339 Pfam HMG (high mobility group) box 264 331 IPR009071 -
Bda12g00990 339 MobiDBLite consensus disorder prediction 1 53 - -
Bda12g00990 339 MobiDBLite consensus disorder prediction 1 27 - -
Bda12g00990 339 Gene3D High mobility group box domain 247 338 IPR036910 -
Bda12g00990 339 SMART hmgende2 263 332 IPR009071 -
Bda12g00990 339 SUPERFAMILY HMG-box 261 333 IPR036910 -
Bda12g00990 339 CDD HMGB-UBF_HMG-box 264 327 - -
Bda12g00990 339 SUPERFAMILY ARID-like 63 163 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00990 - - - qsu:111998428 416.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00466 Bda-Chr1:31772548 Bda12g00990 Bda-Chr12:41215928 3.37E-77 dispersed
Bda08g00034 Bda-Chr8:290244 Bda12g00990 Bda-Chr12:41215928 6.14E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g785 . . . . . . . Bma13g01143 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1272 Cone15ag1298 . . . . . . . Bda12g00990 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01577 . 7 291 ARID Transcription Factor Family AT1G20910 62.1 3.5e-92 335.5
Bda04g00200 . 41 352 ARID Transcription Factor Family AT1G20910 55.0 1.4e-85 313.5
Bda10g00275 . 3 154 ARID Transcription Factor Family AT1G20910 57.2 1.3e-43 174.1
Bda01g00466 . 16 338 ARID Transcription Factor Family AT1G76110 60.4 1.3e-103 373.2
Bda01g01577 . 5 321 ARID Transcription Factor Family AT1G76510 67.2 2.5e-115 412.5
Bda04g00200 . 49 382 ARID Transcription Factor Family AT1G76510 58.8 3.4e-104 375.6
Bda10g00275 . 3 184 ARID Transcription Factor Family AT1G76510 65.9 3.8e-63 239.2
Bda12g00990 . 42 334 ARID Transcription Factor Family AT3G13350 52.7 7.0e-83 304.3
Bda05g00623 CCT,ECH 1 769 ARID Transcription Factor Family AT3G43240 56.4 1.9e-248 855.5
Bda10g00892 . 2 783 ARID Transcription Factor Family AT3G43240 55.6 1.0e-246 849.7
Bda10g00889 CCT,ECH 2 803 ARID Transcription Factor Family AT3G43240 54.5 2.9e-244 841.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016229 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16822 PF01388 ARID 2.70E-17 CL0123 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00990 Bda_Chr12 FPKM 79.272072 79.994141 7.713043 6.402735 105.807312 90.662651 106.076828 0.596939 0.622535