Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda12g00990 | ATGTCTACCTCTCTTAATCAGCATCTATCTGAGAATCCTATAATTGCTGAGAGCCCTCCACCTACTTCGTCTCATCATCAACACCGGCAGGAGCTTCTGAGTGAGAGGCCAAATGGGCCATTACCAGTCTCTACCTCCACTGCCAGCCCCACCAGAACTTACCCTTCTGCTGCTGCTAAGTACGAGGATGTTGCTCAAAGTTCGGAGCTTTTCTGGGAAAAGCTCAAGGGTTTTCATGAATCATTTGGAACTAAATTCGCGGTTCCTACGGTCGGAGGAAAGTCTCTAGATCTACACCGCCTGTTTGTGGAAGTCACCTCTCGCGGCGGCCTTGAAAAGGTTATAAGAGATCGTAGATGGAAGGAACTAATCGGTGTCTTTAACTTCCCAACGACCATTACAAGTGCTTCATTTGTGTTACGGAAGTACTACCTATCGTTACTTTATCACTTCGAGCAGGTCTATTACTTCCAAAAACTGAACATCGCAATGTCTCCTCCTGCCCAAGACGCTGCGAGCAAAACCCGTGAAAATGGATCTAGAAAGGTGAAGAAAGGTGGGATCATGGCCGAGCTGCAAGTTTGTTCAGATCTGCAGATCGGCTCTACGGTGATAGGAACCATAGATGGAAAATTCGATGATGGATATTTAATTACCGTTAACATTGGATCGAAGCAATTTAAAGGTGTGTTATATCATGCACCTGTCACAGTTTCTGAAAATAATCTGGCCTTGTCTACTCGTCGGGGCCGAAAACGATCTAGGCTGGAATCAAGGGATCCGGACCGACCCAAATCAAACAGGAGTGGATACAACTTCTTCTTTGCCGAGCATTATGCGAGGCTGAAACCTTTGTATCACGGGAAAGAGAGGGCTATAAGCAAGAAAATTGGTGTCCTGTGGAACAATCTCACTGAGGCCGAAAAGAAGATATATCAAGAAAAAGGGTTGAAGGACAAGGAAAGATACAGGACAGAAATGCTGGAATACAAATCCTCGAACGCCCCAGCGCCTAAATAG | 1020 | 45.78 | MSTSLNQHLSENPIIAESPPPTSSHHQHRQELLSERPNGPLPVSTSTASPTRTYPSAAAKYEDVAQSSELFWEKLKGFHESFGTKFAVPTVGGKSLDLHRLFVEVTSRGGLEKVIRDRRWKELIGVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFQKLNIAMSPPAQDAASKTRENGSRKVKKGGIMAELQVCSDLQIGSTVIGTIDGKFDDGYLITVNIGSKQFKGVLYHAPVTVSENNLALSTRRGRKRSRLESRDPDRPKSNRSGYNFFFAEHYARLKPLYHGKERAISKKIGVLWNNLTEAEKKIYQEKGLKDKERYRTEMLEYKSSNAPAPK | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 41215928 | 41219575 | + | Bda009541.1 | Bda12g00990 | 18005 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda12g00990 | 339 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 264 | 331 | IPR009071 | - | |
Bda12g00990 | 339 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 47 | 335 | - | - | |
Bda12g00990 | 339 | CDD | ARID_HMGB9-like | 67 | 152 | IPR045303 | GO:0003677 | |
Bda12g00990 | 339 | MobiDBLite | consensus disorder prediction | 243 | 267 | - | - | |
Bda12g00990 | 339 | Gene3D | - | 53 | 181 | IPR036431 | GO:0003677 | |
Bda12g00990 | 339 | ProSiteProfiles | ARID domain profile. | 65 | 156 | IPR001606 | GO:0003677 | |
Bda12g00990 | 339 | SMART | bright_3 | 66 | 157 | IPR001606 | GO:0003677 | |
Bda12g00990 | 339 | Pfam | ARID/BRIGHT DNA binding domain | 69 | 152 | IPR001606 | GO:0003677 | |
Bda12g00990 | 339 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 10-RELATED | 47 | 335 | - | - | |
Bda12g00990 | 339 | MobiDBLite | consensus disorder prediction | 39 | 53 | - | - | |
Bda12g00990 | 339 | SMART | ARID_2 | 62 | 152 | - | - | |
Bda12g00990 | 339 | MobiDBLite | consensus disorder prediction | 246 | 266 | - | - | |
Bda12g00990 | 339 | Pfam | HMG (high mobility group) box | 264 | 331 | IPR009071 | - | |
Bda12g00990 | 339 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Bda12g00990 | 339 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Bda12g00990 | 339 | Gene3D | High mobility group box domain | 247 | 338 | IPR036910 | - | |
Bda12g00990 | 339 | SMART | hmgende2 | 263 | 332 | IPR009071 | - | |
Bda12g00990 | 339 | SUPERFAMILY | HMG-box | 261 | 333 | IPR036910 | - | |
Bda12g00990 | 339 | CDD | HMGB-UBF_HMG-box | 264 | 327 | - | - | |
Bda12g00990 | 339 | SUPERFAMILY | ARID-like | 63 | 163 | IPR036431 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00466 | Bda-Chr1:31772548 | Bda12g00990 | Bda-Chr12:41215928 | 3.37E-77 | dispersed | |
Bda08g00034 | Bda-Chr8:290244 | Bda12g00990 | Bda-Chr12:41215928 | 6.14E-63 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16822 | PF01388 | ARID | 2.70E-17 | CL0123 | Bda | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda12g00990 | - | - | qsu:111998428 | 416.387 |