Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00991 ATGTTGGGAGGGGAATATAGCGATCAGAATCATCTGCTTAGATCGACGGAGGATCATGTAGAGGATAACGACTTGGAAGCTCGTAATGGAGACGGCGATGCAGATGGAGTCCAAAGCCGCAATTACGGGAGTGGTAGTGGAAGATTAGCCGGAGGCTTCATGGATCTGTTTAAGCATTTGAATAGAGGGAGCTTCTCTGGACGCCGTCACAGCTTCAAGCGTCTCGACGGCAATCGAATTAACGATTCCGCATCTCCCGGTGGTAGAGGTGTGGATAGTCATCATCTTCACTCTTATAATGATGACTTTCATCTTCGTCGTCATCATGCCCCTACTGTCAACACCGCCGGTGAGGCCGATTCGGACGACATTCTAGACGACATCGCCCCACCGGAATGGGCGTTGCTCCTTATTGGCTGCCTCGTTGGCCTCGCAACAGGTCTATGTGTTGCTGCATTTAACAAAGGGGTACATGTAATTCATGAATGGGCATGGGCTGGCACTCCAAATGAGGGTGCTGCTTGGCTTCGGTTACAGAGATTAGCTGATACTTGGCATCGCATTCTTCTAATACCAGTCACTGGAGGTGTCATTGTTGGCATGTTGCATGGCTTAGTTGAAATACTCTACGAAATCAAGCAATCCAGTCCTTCTCAAAGGCCAGGATTTGATTTACTTGCTGGAGTCTTTCCCACAGTAAAGGCCATTCAGGCAGCTATCACTTTGGGTACTGGTTGTTCATTAGGTCCCGAAGGACCTAGTGTGGATATTGGAAAATCTTGTGCAAATGGGTTCTATTTAATGATGGAAAACAATAGTGAAAGGATAAAAATAGCCTTTGTTGCTGCTGGTGCAGCTGCTGGAATAGCTTCAGGCTTTAATGCAGCTGTTGCTGGTTCCTTTTTTGCTATAGAGACTGTTTTAAGGTCCCAACGAGCTGAAAATTCACCACCATTTACAACAGCAATGATTATTCTTGCTTCTGTTATCTCATCTACCGTTTCAAATGTTTTACTTGGGACACAGTCAGCTTTTACAGTTCCTGCATATGATTTGAAGTCTGCGGCAGAATTACCTTTATACCTGATATTGGGCATGCTATGCGGAGTTGTGAGTGTGGCTGTGACTCGGTTAGTCAGTTGGTTTCATAAATCATTTGATTTTATCAAGGACAGATTTAGCCTTCCCGCTGTTGTCTGTCCTGCTTTAGGCGGTTTAGGAGCTGGAATAATTGCTCTTAAGTATCCAGGGATTCTGTATTGGGGCTTCACAAATGTGGAAGAAATCCTACATACTGGAAAGAGTGCCTCTGCTCCTGGAATCTGGTTGTTAACTCAATTAGCTGCGGCGAAGGTTGTTGCAACTGCTTTGTGCAAGGGTTCTGGACTTGTGGGTGGCCTTTATGCCCCAAGTCTAATGATTGGTGCAGCTGTTGGTGCTGTATTTGGTGGTTCAGCCGCAGAAGTTATTAATTCTGCCATTCCTGGAAATGCAGCTGTTGCACAGCCACAAGCATATGCACTGGTTGGAATGGCTGCTACACTTGCTTCAGTTTGTTCAGTTCCCTTGACGTCAGTTCTTCTTCTGTTTGAGCTGACAAAGGATTACAGGATTCTGCTTCCTCTCATGGGAGCTGTTGGATTAGCCATTTGGGTTCCTTCAGTTACAAAGCAAGGCAAGGAGATTGAAGCTTCTGAAAGTCATGGGTCTTCTAGAGGCTATTCTTCCCTTTCTCCTTCTGAACGTGATATTGAAATTACAAGGAGATGGAATGATGCAAGCAATAATTTGGAACTCTCAACTATTGAAAATGTATCAGTCTGCCAAACAATTGATGAAGATATTCTTATGGAAGATATGAAGGTTTCTCAGGCAATGTCAAAGAACTTTCTGAAGATTTCATTATCAACAAGCTTGAAAGATGCAATCAAATATATGAATGAAAGTCAACAGAACTGTGCTTTAGTGGTGGATGATGGAGATTTGCTTGAGGGAATATTAACAAATGGTGACCTTAGACGGTATCTGTCTAAAGTGTCTGGCGGAGCTTCTTCCGATGGAGATTCAAGACTGCTGGATGTGGATGGAAGTGTTGTGTCCTCAGTTTGTACTAGGGTAATAAGCTATCGTGGGCGAGAGCGTGGGCTTCTAAGTTGTTACCCAGACACTGATTTGGCAACAGCAAAGGATCTAATGGAGGCCAAGGGAATAAATCAGCTACCAGTGGTAAAGCGCAGAGCTCCTAAGAAGCATGGGAAACGAAGAGTTGTTGCTGTTCTCCACTACGATTTAATACGAAATTGTGTCAGGTGCACGTTAGTTCCTTTTAAAATTGTTTATTGA 2343 44.34 MLGGEYSDQNHLLRSTEDHVEDNDLEARNGDGDADGVQSRNYGSGSGRLAGGFMDLFKHLNRGSFSGRRHSFKRLDGNRINDSASPGGRGVDSHHLHSYNDDFHLRRHHAPTVNTAGEADSDDILDDIAPPEWALLLIGCLVGLATGLCVAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMLHGLVEILYEIKQSSPSQRPGFDLLAGVFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYLMMENNSERIKIAFVAAGAAAGIASGFNAAVAGSFFAIETVLRSQRAENSPPFTTAMIILASVISSTVSNVLLGTQSAFTVPAYDLKSAAELPLYLILGMLCGVVSVAVTRLVSWFHKSFDFIKDRFSLPAVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEVINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQGKEIEASESHGSSRGYSSLSPSERDIEITRRWNDASNNLELSTIENVSVCQTIDEDILMEDMKVSQAMSKNFLKISLSTSLKDAIKYMNESQQNCALVVDDGDLLEGILTNGDLRRYLSKVSGGASSDGDSRLLDVDGSVVSSVCTRVISYRGRERGLLSCYPDTDLATAKDLMEAKGINQLPVVKRRAPKKHGKRRVVAVLHYDLIRNCVRCTLVPFKIVY 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41237344 41243470 + Bda009542.1 Bda12g00991 18006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00991 780 CDD Voltage_gated_ClC 143 549 - -
Bda12g00991 780 Pfam CBS domain 622 677 IPR000644 -
Bda12g00991 780 Pfam CBS domain 715 749 IPR000644 -
Bda12g00991 780 SUPERFAMILY CBS-domain pair 616 744 IPR046342 -
Bda12g00991 780 MobiDBLite consensus disorder prediction 1 43 - -
Bda12g00991 780 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 4 772 - -
Bda12g00991 780 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 4 772 - -
Bda12g00991 780 ProSiteProfiles CBS domain profile. 626 684 IPR000644 -
Bda12g00991 780 Gene3D - 608 767 IPR046342 -
Bda12g00991 780 PRINTS Chloride channel signature 463 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda12g00991 780 PRINTS Chloride channel signature 286 305 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda12g00991 780 PRINTS Chloride channel signature 234 253 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda12g00991 780 PRINTS Chloride channel signature 504 520 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda12g00991 780 PRINTS Chloride channel signature 522 541 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda12g00991 780 SUPERFAMILY Clc chloride channel 131 556 IPR014743 -
Bda12g00991 780 Pfam Voltage gated chloride channel 230 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda12g00991 780 SMART cbs_1 629 677 IPR000644 -
Bda12g00991 780 SMART cbs_1 715 769 IPR000644 -
Bda12g00991 780 CDD CBS_pair_voltage-gated_CLC_euk_bac 626 766 - -
Bda12g00991 780 Gene3D Clc chloride channel 125 568 - -
Bda12g00991 780 MobiDBLite consensus disorder prediction 11 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00991 - - - csv:101212254 1036.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00991 Bda-Chr12:41237344 Bda05g00658 Bda-Chr5:54900813 2.74E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00991 Bda_Chr12 FPKM 15.418965 18.340805 8.992755 9.350783 23.908791 21.848669 25.278234 3.148016 3.195453