Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00992 ATGGCGGGAATTGAAGAAAATGTTGCTTTGAGTGGAGACTGGCTGGCTCCCAGTCCCAGCCCAAGAACATTCTTCTCTGCAATGCTTGATGAAGATTTAGGCTCAAGGTCTGCTGCAATGGAGTCTGGTAGGAATAATCAAGAGCCATTCTTTCTCAGACCTCAAGAGGAGAGGTTTATGGAAAACTCCGAGGCTATGGAGGGGACTGTTCAGCCATCTCCGACCACCGGAAAACTTCCATTTTTTACAAGCGATAACATTATGAGCTCCTCTTTAATGTTGGAGGCGACTAATAGAAGTAAAGATCATCTCTTTAGCAGTATCAATACGCCCCCATTTGCGTTTAAGCCGGAGATGGCTCCGACCGCTCATCTGCAGCCATCTTTTCCGGCCGAGGCTTCAGTACAATCGGAGAGTTCTCTTAAATCTCACAGTGCAGAACTGTCTAAACCTCCATCGAAGGGTCATGGAGATTTTTCGCCGGATCAAAGATTCTTCGATTCTATCGATGAATGCAACAAACATTCTCCGCCGCTCTGTGAGCGTCAAGATGAAGACGGAGAGCAAAGAGCCACCGAAGAGTCGGTGGTTCCGAATAATTGCGGTGCCCCATCGGACGATGGATATAACTGGAGAAAATACGGACAGAAACAGGTAAAAGGAAGTGAGTATCCGAGAAGTTATTATAAATGCACTCATCCAAACTGTCAGGTTAAGAAGAAGGTCGAACGCTCCTACGAGGGCCACATAACGGAGATCATCTATAAGGGCGCACACAACCATCCGAAGCCTTCCCCAAATCGGTGTAATCCGATGCAAAAAGACATGAATGAACAGCCACAGAGTTGCGAAGCTGATCTACTCTGGACAAGCCTGCGAAAAGGGACTTTGGCTGGAGCTTCTGATTGGAGGAATGACAACCCCGAGGTAACTTCATCGGCTTCGGTGGGTCCTGAATACGTCAATCAATCCACCTCCTTACAGCTTCAGAACGGCTCCCATTTTGAGCAAGGCGATGCAGTTGACGTTTCCTCTACGTTTTCCAACGACGAAGACGAAGAAGATCAAGGAACTCATGGGAGCGTGTCGATAGGGCCATGA 1101 47.87 MAGIEENVALSGDWLAPSPSPRTFFSAMLDEDLGSRSAAMESGRNNQEPFFLRPQEERFMENSEAMEGTVQPSPTTGKLPFFTSDNIMSSSLMLEATNRSKDHLFSSINTPPFAFKPEMAPTAHLQPSFPAEASVQSESSLKSHSAELSKPPSKGHGDFSPDQRFFDSIDECNKHSPPLCERQDEDGEQRATEESVVPNNCGAPSDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSYEGHITEIIYKGAHNHPKPSPNRCNPMQKDMNEQPQSCEADLLWTSLRKGTLAGASDWRNDNPEVTSSASVGPEYVNQSTSLQLQNGSHFEQGDAVDVSSTFSNDEDEEDQGTHGSVSIGP 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41247437 41249157 - Bda009543.1 Bda12g00992 18007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00992 366 MobiDBLite consensus disorder prediction 298 366 - -
Bda12g00992 366 MobiDBLite consensus disorder prediction 127 209 - -
Bda12g00992 366 Pfam WRKY DNA -binding domain 206 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00992 366 MobiDBLite consensus disorder prediction 257 277 - -
Bda12g00992 366 MobiDBLite consensus disorder prediction 305 345 - -
Bda12g00992 366 MobiDBLite consensus disorder prediction 66 82 - -
Bda12g00992 366 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 183 364 - -
Bda12g00992 366 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 183 364 IPR044810 GO:0003700
Bda12g00992 366 Gene3D WRKY domain 192 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00992 366 SMART WRKY_cls 205 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00992 366 MobiDBLite consensus disorder prediction 129 147 - -
Bda12g00992 366 MobiDBLite consensus disorder prediction 160 192 - -
Bda12g00992 366 ProSiteProfiles WRKY domain profile. 206 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00992 366 MobiDBLite consensus disorder prediction 63 82 - -
Bda12g00992 366 SUPERFAMILY WRKY DNA-binding domain 204 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00992 K18835 WRKY2; WRKY transcription factor 2 - qsu:111999931 348.591
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00992 Bda-Chr12:41247437 Bda12g00951 Bda-Chr12:40590110 1.47E-14 dispersed
Bda12g00992 Bda-Chr12:41247437 Bda05g01247 Bda-Chr5:60331698 3.20E-14 transposed
Bda12g00992 Bda-Chr12:41247437 Bda03g01738 Bda-Chr3:56793694 2.53E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g794 . . . . Bpe09g00095 . Bma10g00638 Bma13g01146 . Cmo06g00665 . . . . . . . . . . . . . . Cla10g00374 . . . . . . . . Cone14ag1277 Cone15ag1303 . . . . . Blo10g00892 . Bda12g00992 . Bpe03g00733 . . . . . . Cma16g00995 . Car16g00952 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004749 1 2 1 2 2 1 1 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16823 PF03106 WRKY 1.10E-24 CL0274 Bda TF