Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00993 ATTGTAGATCAAATGGCAGCGCCAGCGACTTCAGATGTTTGTGATTCAAATGATGCACTTCTATCAAGTGGGGAGCTGCGAGTCCTGCAACCGATCTTCCAGATTTACGGCAATTCTCGAGCATTTTCAGGCCAGATCGTCACCCTCAAGGTGTTCGAAGACAATGTTCTTGTGAGAGAGATACTTGAAACGAAAGGCGAAGGAAGAGTTCTAGTGATCGACGGTGGGGGAAGCAGGAGATGTGCTTTGGTGGGGGGAAATATTGGACAATTGGCTCAAAACAATGGGTGGTCTGGGATTGTAGTCAGTGGATGTGTTCGAGACGTCGACGAGATCAATGGATGTGCGATTGGGGTGAGAGCTTTGGGATCGAATCCTACAAAGTCAATCAAGAAGGGCCTTGGCCAAAAGCACGTCCCTATCGAAATTGGGGGCACTTTGGTTCACGAGGGGGAGTGGTTGTATGCGGATAGTGATGGTGTTATCGTTTCCAAATTCGAGCTGTCCGTTTGA 513 48.54 IVDQMAAPATSDVCDSNDALLSSGELRVLQPIFQIYGNSRAFSGQIVTLKVFEDNVLVREILETKGEGRVLVIDGGGSRRCALVGGNIGQLAQNNGWSGIVVSGCVRDVDEINGCAIGVRALGSNPTKSIKKGLGQKHVPIEIGGTLVHEGEWLYADSDGVIVSKFELSV 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41255424 41255936 + Bda009544.1 Bda12g00993 18008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00993 170 Pfam Aldolase/RraA 10 163 IPR005493 -
Bda12g00993 170 TIGRFAM NOT-MenG: RraA family 10 164 IPR010203 GO:0008428|GO:0051252
Bda12g00993 170 Gene3D - 5 170 - -
Bda12g00993 170 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 5 170 - -
Bda12g00993 170 SUPERFAMILY RraA-like 10 168 IPR036704 -
Bda12g00993 170 CDD RraA_family 11 164 IPR005493 -
Bda12g00993 170 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED 5 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00993 - - - csv:101207435 280.796
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01224 Bda-Chr4:62815791 Bda12g00993 Bda-Chr12:41255424 1.95E-41 dispersed
Bda12g00993 Bda-Chr12:41255424 Bda13g01847 Bda-Chr13:42595982 1.52E-80 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g796 . . . . Bpe09g00094 . . Bma13g01147 . . . . . . . . . . . . . . . . Cla10g00363 Cam10g0375 Cec10g0394 Cco10g0388 Clacu10g0379 Cmu10g1216 Cre10g0630 . . . . . . . . . Blo10g00893 . Bda12g00993 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001787 2 3 2 2 2 2 3 2 2 2 3 2 3 2 1 3 2 1 2 2 2 4 2 2 2 2 1 5 3 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00993 Bda_Chr12 FPKM 30.039059 30.71314 40.06834 39.278393 34.684483 39.371239 32.797478 47.520363 46.008083