Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g01000 GCCTGCCAACTGACCACCAAGAATCCGCAGTCGGCCGCCATGCTCGACCGCATACTCCGCCTTCTGGTCAGCCACTCCGTGCTCCACTGCTCTCCAGCTACAGACACTAATGGCGATCTCCAGAGAGTGTATAGCCTAGCGCCAGTGGCCAAGTTCTTTGTTCCTGATGAAGATGGCGTTGCTTTAGGCCCTTTCCAAGCTCTGGCTCAGAACAAACTCTTTCTGGAAAGCTGGTCCCAAATGAAGAGTGCAGTTCTTGAAGGAGGAATTCCTTTCAACAAAGTGCATGGATGCCATTCATATGAGTACCCTGCAAAAGATGAAAATTTCAATGCAATCTTCAACTCTGCAATGTTCAACCACACCACTATTGTCATGAAGAAGGTTCTGCAGACCTACAATGGCTTCCTCAGCCTCAACACACTGGTGGATGTGGGTGGAGGGCTAGGGACAACCCTTAGTGTAATAACTTCCAAATACCCTTCTATCAAGGGTGTTAATTTTGATCTTCCTCATGTTATTACTCAAGCCCCGCATTATGCAGGGGTTGAACATGTCGGTGGGGATATGTTTGAGAGTGTTCCAAGAGGAGATGCCATTTTTTTGAAGTGGATACTCCATAACTGGAGTGATGATCACTGCTTGAAGTTGCTGAAGAGCTGCTTTGTCGCGTTACCTGATGCCGGAAATGTGATCGTCATGGAAGCAGTTGTTCCTAGCATGCCGGAATCAACTATAGCCTACAGAAACACATGCGCAATGGATGTGATGATGATGACTCAATACACAGGAGGAAAGGAGAGGACCAAAGAGGAATTCATCGCCTTGGCGACCAGAGCCGGATTCAGCGGTGTTAGATTCCCATGTTTCGTATCAAACTTTTGGATCATGGAGTTCTTCAAGTAA 906 47.35 ACQLTTKNPQSAAMLDRILRLLVSHSVLHCSPATDTNGDLQRVYSLAPVAKFFVPDEDGVALGPFQALAQNKLFLESWSQMKSAVLEGGIPFNKVHGCHSYEYPAKDENFNAIFNSAMFNHTTIVMKKVLQTYNGFLSLNTLVDVGGGLGTTLSVITSKYPSIKGVNFDLPHVITQAPHYAGVEHVGGDMFESVPRGDAIFLKWILHNWSDDHCLKLLKSCFVALPDAGNVIVMEAVVPSMPESTIAYRNTCAMDVMMMTQYTGGKERTKEEFIALATRAGFSGVRFPCFVSNFWIMEFFK 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41387133 41389330 + Bda009554.1 Bda12g01000 18015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g01000 301 SUPERFAMILY Winged helix DNA-binding domain 2 56 IPR036390 -
Bda12g01000 301 Gene3D - 3 129 IPR036388 -
Bda12g01000 301 Pfam O-methyltransferase domain 78 283 IPR001077 GO:0008171
Bda12g01000 301 Gene3D Vaccinia Virus protein VP39 111 290 IPR029063 -
Bda12g01000 301 PIRSF O-mtase 1 301 IPR016461 GO:0008168
Bda12g01000 301 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE 2 300 - -
Bda12g01000 301 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 62 299 IPR029063 -
Bda12g01000 301 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 301 IPR016461 GO:0008168
Bda12g01000 301 PANTHER O-METHYLTRANSFERASE 2 300 IPR016461 GO:0008168
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00956 Bda-Chr12:40662351 Bda12g01000 Bda-Chr12:41387133 2.58E-33 dispersed
Bda12g01000 Bda-Chr12:41387133 Bda12g01003 Bda-Chr12:41491586 3.86E-159 dispersed
Bda12g01000 Bda-Chr12:41387133 Bda12g01001 Bda-Chr12:41466125 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g01000 K13066 - tcc:18589884 422.55