Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g01018 ATGAGTTGGGTGTATTTTTTAACAGATAAATCAGAGACTTTTGAAAGTTTTAGAAAATTCAAGGCTTTGGTAGAAAAGCAAAAGGGAATTTTTATCAAAACTCTTCGCACAGATAGAGGTGGTGAGTTTTTATCTAAAGAATTTAATTCCTTCTGTGAAGAACATGGAATTTTCAGGGAATTGACAACACCGTACACATTGGAGCAAAACGGTGTAGCCGAACGAAAGAACCGAACAGTTTTGGAGATGGCTAGAAGCTTGCTCAAGGCTAGAGGACTTCCAGATCATTTTTGGGGTGAAGCAATTGCAACGTCTGTTTACTTACTGAATATTTCTCCTACAAGAGCTGTCTTAAATCAGACACTGTACGAGGCTTGGCGAGATAGAAAACCATCAGTAAGTCACTTGAGAATTTTTGGTTGTATTGCTTATGCTTTGAAAAATTCTCAATTTCGTCAAAAGTTTGAGAATAAATCTGAAAAGTACATTTTTGTTGGTTATTTTCTCAATCAAAAGAATGTGGCTCCCATTCCGAAACCAGGCTACTTCGGAGCTCAAGCAGTGGCCATTAGAATCGCCGGAGACAAATCGGCGTTCTGGGGGTGCGGCTTTTTCGGCGCGCAGGATACCCTTCACGATGATATAGGTCGCCATTACTTCAAGGAATGCTATATTCAGGGTTCCATCGATTTCATCTTCGGCAATGGAACATCATTCTATGAGAACTGCCAGTTGATATCGATGGCAAACCCAGTAAGTCCGGGGAAAAGGGTGATAAACGGCGCGGTGAAGGCGAACGGAAGGGCGTCGAAGGACGAGAACTCGGGCTTTGCTTTCGTCAACTGCAGCATTGGAGGCAGCGGAAGGGTATGGCTGGGGAAGGCGTGGCGGCCATTTTCGCGCGTCGTCTTCGCCCTCTGCACCATGTCTGAAATCATAGCTCCGGAGGGTTGGAATGACTTCAACGATCCTACCAGAGACTCGTCGATCTTCTATGGAGAATACAACTGCAGAGGCCCAGGATCAAACGTGACACTCACGGCTCCTTACGTTCAAAGACTAAATGAAACACAAGTCTCTCCTTTCCTCAACCTATCCTTCGTCAATGCTGATCAATGGTTGCAACCCTACTACTCGGATTAA 1143 44.44 MSWVYFLTDKSETFESFRKFKALVEKQKGIFIKTLRTDRGGEFLSKEFNSFCEEHGIFRELTTPYTLEQNGVAERKNRTVLEMARSLLKARGLPDHFWGEAIATSVYLLNISPTRAVLNQTLYEAWRDRKPSVSHLRIFGCIAYALKNSQFRQKFENKSEKYIFVGYFLNQKNVAPIPKPGYFGAQAVAIRIAGDKSAFWGCGFFGAQDTLHDDIGRHYFKECYIQGSIDFIFGNGTSFYENCQLISMANPVSPGKRVINGAVKANGRASKDENSGFAFVNCSIGGSGRVWLGKAWRPFSRVVFALCTMSEIIAPEGWNDFNDPTRDSSIFYGEYNCRGPGSNVTLTAPYVQRLNETQVSPFLNLSFVNADQWLQPYYSD 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41759977 41765192 + Bda009580.1 Bda12g01018 18033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g01018 380 Gene3D - 126 379 IPR012334 -
Bda12g01018 380 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 164 377 - -
Bda12g01018 380 Gene3D - 1 125 IPR036397 GO:0003676
Bda12g01018 380 SUPERFAMILY Ribonuclease H-like 3 131 IPR012337 -
Bda12g01018 380 ProSiteProfiles Integrase catalytic domain profile. 1 130 IPR001584 GO:0015074
Bda12g01018 380 Pfam Pectinesterase 181 346 IPR000070 GO:0030599|GO:0042545
Bda12g01018 380 SUPERFAMILY Pectin lyase-like 181 378 IPR011050 -
Bda12g01018 380 PANTHER PECTINESTERASE 8-RELATED 164 377 - -
Bda12g01018 380 ProSitePatterns Pectinesterase signature 2. 225 234 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01304 Bda-Chr7:15871097 Bda12g01018 Bda-Chr12:41759977 1.80E-54 dispersed
Bda08g00581 Bda-Chr8:5911296 Bda12g01018 Bda-Chr12:41759977 2.07E-58 dispersed
Bda12g01018 Bda-Chr12:41759977 Bda07g01340 Bda-Chr7:16154536 5.89E-40 dispersed
Bda14g01132 Bda-Chr14:10353374 Bda12g01018 Bda-Chr12:41759977 3.14E-12 dispersed
Bda12g01018 Bda-Chr12:41759977 Bda12g01019 Bda-Chr12:41833996 6.33E-46 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g01018 - - oeu:111375603 368.622