Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g01035 TGGCAGCAAGCTGCTCTGGTGCTAAATGCTTCTAGGAGGTTCCGGTATACTTTGGACTTGAAGAAGGAAGAAGAAAAGGAGCAAAGAAGACGGATGATAAGGGCCCATTCACAAGTCATACGAGCGGCATTGCTTTTCAAATTGGCTGGGGAGAGGCAAATTGGATCAGTCTCTTTGACAGAATCTCCAAATTACAATGGGGATTATGGGGTTCAATTGGAACAACTAGTATCGTTAACCAGAGATCATAATTTTTCCGCTCTACAACAATATGGAGGGGCAAACTATTTCCTTCACCAGGTTAAAGGGCTAGCAAATGTGCTGAAAACTAATCTACAGAAAGGAATCACGGGAGATGATTTGGATCTATCAAAACGAAGAAATGCATTTGGATCAAATACATATCCTCGCAAAAAAGGGCGGAGTTTTTGGAGGTTTCTTTGGGAAGCTTGGCAAGATTTGACTCTTATCATATTAATCATTGCTGCTGTTGCATCGTTAGTTTTGGGAATAAAAACGAAGGGTCTTGAGGAAGGATGGCTGGATGGAGGGAGCATAACATTTGCTGTTATTCTAGTAATAATGGTTACAGCTGTTAGCGATTATCGGCAATCACTCCAATTTCAAAATTTAAACGAGGAAAAGCAAAATATACGAATGGAGATCATGAGGGATGGTAGAATTGAAAAGGTGTCAATATTTGATATTGTTGTTGGTGATGTCATACCTCTCAGAATAGGTGATCAGGTCCCTGCTGATGGAATTTTGGTTAGCGGTCATTCACTTGCCATAGATGAATCTAGCATGACAGGAGAAAGCAAGATTGTCCATAAAGGCCATAAAACCCCTTTTTTGATGTCTGGGTGTAAAGTAGCAGATGGAGTTGGTAGTATGCTGGTTACTGGTGTTGGAATCAACACTGAATGGGGGTTACTGATGGCAAGTATTTCAGAGGATACTGGCGAGGAGACCCCCTTGCAGGTACGCTTGAATGGAGTTGCAACTTTCATTGGCATTGTTGGTCTTGCAGTTGCTTTGGCTGTGCTGTCTGTCCTTTTGGGCAGGTACTTGACTGGACATACCACGAATGCCGATGGGACTGTACAGTTTAAGATGGGCAAGACTGGCCTCGGCGATGCAGTTGATGGAATCATTAAAATTGTCACTGTTGCTGTGACCATTGTGGTTGTTGCAGTTCCCGAAGGACTTCCCTTGGCTGTTACTCTGACATTAGCTTATTCCATGCGCAAAATGATGGCAGATAAAGCCTTGGTTCGTCGGCTGTCTGCCTGTGAAACCATGGGTTCTGCAACGACTATTTGTAGCGATAAGACAGGAACATTGACGCTGAATCAGATGACTGTGATTGAAGCCTATGTGGGAAGAGAGAAGATCAATCCAGTTGATGATTCGGCGCAGTTGCATCCAGCCGTATTGTCTCTCCTAAGTGAAGGCATTGCACAAAATAGCACAGGGAACGTTTTTGTGCCTAAGAGTGGTGAAGAAGTCGAGGTTTCTGGATCTCCTACTGAAAAAGCTTTACTGTCTTGGGCCGTCAAGCTTGGAATGAAGTTTGATGTTGTTAGGTCAGAATCCAAAGTTCTCCATGTTTTTCCTTTCAACTCAGAGAAAAAGAGAGGAGGTGTTGCAGTAAAGCAGGTTGACTCAAAAGTTCATATACACTGGAAGGGAGCGGCGGAGGTAGTTTTAGCTTCCTGTACAGAGTATCTTGACTTGAATGGTGATTTACAGTCAATTGGCGAAGACAAGGTTAGTGAATTTTTTAAGGCCGCTATTGATGATATGGCTGCAAGATGTTTGCGATGTATTGCCATCGCATACAAAGTTCCTGAGTTAGATCAAGTTCCAACTGATGAAGAGCATCTAGCGCAATGGGCTCTACCTGAAGAGGATCTTGTCTTGCTCGCTATAGTTGGTATCAAGGATCCTTGTCGCCCTGGTGTAAAAACTGCAGTGAAAATATGCTCAGATGCTGGTGTAAAGGTGCGCATGGTTACAGGAGATAATCTGCAAACTGCAAAAGCTATATCTTTCGAGTGTGGGATACTTGATTCGAGTGAAGATGTGACTGAACCTCGTATTATTGAAGGAAAAGTATTCCGGGCACTTTCTGAGAAAGAAAGAGAACAAATGGCCGATAAGATTACGGTGATGGCAAGATCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCTCTGCGAAAGAGAGGAGAAGTTGTTGCTGTTACGGGAGACGGGACTAATGATGCTCCTGCACTCCATGAGGCAGATATTGGACTTTCCATGGGTATTCAAGGAACAGAAGTTGCAAAAGAAAGTTCTGATATTGTTATCCTGGACGACAACTTTGCTTCAGTCGTGAAGGTTGTTCGCTGGGGGCGTTCTGTGTACGCAAATATTCAGAAGTTCATCCAATTCCAGCTAACCGTAAATGTTGCAGCTCTTGTAATTAATGTTGTTGCAGCAATATCTTCCGGCGATGTTCCTTTAAATACAGTGCAGCTGTTGTGGGTTAACCTAATCATGGATACACTCGGTGCACTAGCTTTGGCAACTGAACCACCAACTGACCACCTCATGCATAGACCTCCTGTCGGCAGAAGGGAGCCTCTTGTAACAAACATTATGTGGAGAAATCTGATCATACAGGCTTTATATCAAGTTGGTGTGCTCCTAGTTCTTAACTTCTGGGGTACCGATATTCTTGATCTAAAAGATAGCACAAAGGCGCATGTTGTTGAAGTGAAGAATACAGTCATATTCAATGCTTTCGTCCTCTGCCAAATATTCAATGAGGTCAATGCTCGAAAGCCTGATGAAATGAACATATTCAGTGGAATAACTAAAAACAATCTCTTCATGGGAATTGTTGGAGGGACCTTTCTACTTCAGATCATCATCATCCAATTTCTTGGTAAATTTACAACAACAGTAAGACTCAACTTGGAGCAATGGCTTATGTGCCTTGGAATCGGTCTAGTTGGCTGGCCTCTGGCCGCAATTGGAAAGCTCATCCCAGTTCCGGCGACCCCAGTTGCCAAATATTTCAGCAGGTGCAGTCTAATCCACCGACGCAGAAATGCTTGA 3108 43.34 WQQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHSQVIRAALLFKLAGERQIGSVSLTESPNYNGDYGVQLEQLVSLTRDHNFSALQQYGGANYFLHQVKGLANVLKTNLQKGITGDDLDLSKRRNAFGSNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAVASLVLGIKTKGLEEGWLDGGSITFAVILVIMVTAVSDYRQSLQFQNLNEEKQNIRMEIMRDGRIEKVSIFDIVVGDVIPLRIGDQVPADGILVSGHSLAIDESSMTGESKIVHKGHKTPFLMSGCKVADGVGSMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVALAVLSVLLGRYLTGHTTNADGTVQFKMGKTGLGDAVDGIIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVIEAYVGREKINPVDDSAQLHPAVLSLLSEGIAQNSTGNVFVPKSGEEVEVSGSPTEKALLSWAVKLGMKFDVVRSESKVLHVFPFNSEKKRGGVAVKQVDSKVHIHWKGAAEVVLASCTEYLDLNGDLQSIGEDKVSEFFKAAIDDMAARCLRCIAIAYKVPELDQVPTDEEHLAQWALPEEDLVLLAIVGIKDPCRPGVKTAVKICSDAGVKVRMVTGDNLQTAKAISFECGILDSSEDVTEPRIIEGKVFRALSEKEREQMADKITVMARSSPNDKLLLVQALRKRGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRPPVGRREPLVTNIMWRNLIIQALYQVGVLLVLNFWGTDILDLKDSTKAHVVEVKNTVIFNAFVLCQIFNEVNARKPDEMNIFSGITKNNLFMGIVGGTFLLQIIIIQFLGKFTTTVRLNLEQWLMCLGIGLVGWPLAAIGKLIPVPATPVAKYFSRCSLIHRRRNA 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42089457 42099088 + Bda009601.1 Bda12g01035 18050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g01035 1035 SMART Cation_ATPase_N_a_2 97 171 IPR004014 -
Bda12g01035 1035 SUPERFAMILY HAD-like 439 855 IPR036412 -
Bda12g01035 1035 Pfam Cation transporter/ATPase, N-terminus 100 166 IPR004014 -
Bda12g01035 1035 ProSitePatterns E1-E2 ATPases phosphorylation site. 443 449 IPR018303 -
Bda12g01035 1035 SUPERFAMILY Calcium ATPase, transduction domain A 219 314 IPR008250 -
Bda12g01035 1035 Gene3D - 123 317 - -
Bda12g01035 1035 Gene3D - 149 1003 - -
Bda12g01035 1035 Pfam Ca2+-ATPase N terminal autoinhibitory domain 1 25 IPR024750 GO:0005516
Bda12g01035 1035 SFLD p-type atpase 423 802 IPR044492 -
Bda12g01035 1035 CDD P-type_ATPase_Ca_PMCA-like 123 883 - -
Bda12g01035 1035 Gene3D - 438 795 IPR023214 -
Bda12g01035 1035 PRINTS Sodium/potassium-transporting ATPase signature 184 204 - -
Bda12g01035 1035 PRINTS Sodium/potassium-transporting ATPase signature 822 843 - -
Bda12g01035 1035 PRINTS Sodium/potassium-transporting ATPase signature 560 578 - -
Bda12g01035 1035 PRINTS Sodium/potassium-transporting ATPase signature 434 455 - -
Bda12g01035 1035 Pfam E1-E2 ATPase 220 419 - -
Bda12g01035 1035 Pfam Cation transporting ATPase, C-terminus 835 1012 IPR006068 -
Bda12g01035 1035 SUPERFAMILY Calcium ATPase, transmembrane domain M 96 1014 IPR023298 -
Bda12g01035 1035 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 95 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Bda12g01035 1035 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 448 647 IPR023299 GO:0000166
Bda12g01035 1035 Pfam haloacid dehalogenase-like hydrolase 438 764 - -
Bda12g01035 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 830 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda12g01035 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 381 468 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda12g01035 1035 PANTHER CATION TRANSPORTING ATPASE 1 1028 - -
Bda12g01035 1035 Gene3D - 1 48 - -
Bda12g01035 1035 Gene3D - 451 650 IPR023299 GO:0000166
Bda12g01035 1035 PRINTS P-type cation-transporting ATPase superfamily signature 774 786 - -
Bda12g01035 1035 PRINTS P-type cation-transporting ATPase superfamily signature 643 654 - -
Bda12g01035 1035 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Bda12g01035 1035 PRINTS P-type cation-transporting ATPase superfamily signature 665 675 - -
Bda12g01035 1035 PRINTS P-type cation-transporting ATPase superfamily signature 265 279 - -
Bda12g01035 1035 PRINTS P-type cation-transporting ATPase superfamily signature 441 455 - -
Bda12g01035 1035 SFLD Haloacid Dehalogenase 423 802 - -
Bda12g01035 1035 PANTHER CALCIUM-TRANSPORTING ATPASE 1 1028 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00797 Bda-Chr2:48657146 Bda12g01035 Bda-Chr12:42089457 4.56E-106 dispersed
Bda11g00111 Bda-Chr11:1476110 Bda12g01035 Bda-Chr12:42089457 0 dispersed
Bda11g01478 Bda-Chr11:21500638 Bda12g01035 Bda-Chr12:42089457 0 dispersed
Bda12g00373 Bda-Chr12:4278000 Bda12g01035 Bda-Chr12:42089457 0 dispersed
Bda12g01035 Bda-Chr12:42089457 Bda03g00182 Bda-Chr3:1491857 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g01035 K01537 - mnt:21385058 1560.43