Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g01041 AAAACGATGGTTGACGTCAAGCCAGTGATGGCCGGAGTGCCAGATTCCGGCAGTCGACCGTCTGTGTCGGAGCTAAACAAGAAGAAGATCTTATTCTGGGTTCTCTCTGCTGTTCTTCTGATTTCTGATTTCATCGGAGTTGAGTCGAGAGAAAACTCCGACGAGGTCGACACTTTTCTTCCTTCCCATTCTATTATCAAAACCTCTTGCTGCTCCACTTTATACCCCGACTTATGCGTCTCCGCCATTACCTCTGTTGACGGAGCTAGCAAAAAAGTCTCCAGCCCGAAGGACGTCATCGAGCTGTCGTTAAATATCACGATCGAAGCCGTGAAGAAAAATTATTTAGCCATTAAAAAGCTTAGGAGCAGAGAAGGATTGACCAAGCGCGAGAAGGTTGCGGTCCATGATTGCTTGGATAACATGGAAGACACCCTCTACGAGCTCTACAAAGTTGTAGAGGTTCTCCATTTGTACCCAACTAAGAAATCTCTAGCCCAGCACGCCGACGACCTTAAGACTTTACTCAGCTCCACAATCACCAACCAGGAATCTTGCTTAGACGGGTTCTCTTACGACGATGCCGACAGAAAGGTGGGGAAGGTGCTGCTCAAGGCGGAGATCCATATCGAGAAACTGTGCAGCAATGCTTTGGCGATGATTAAGAACATGACCGACACTGATATAATCAACGAGAGTAAAATGATGGGAAGGAAGAAGCTGAAGGAGGAGGTGGGTCACGACGACATAAAGTGGCCGGATTGGCTGTCGGGTTCCGACAGACGGCTGTTGCAGTCGACTTCAGTGACACCGAATGTGGTGGTGGCAGCCGACGGCAGTGGGAACTACCGGACAGTCTCGGAAGCAGTGGCAGCCGCACCGTCAAGGAGTTCTACCAGATATGTTATCAGAATCAAGGCGGGAGTCTACCGGGAATATGTAAATGTGCCGAGGACCAAGACCAATATCATGTTTATGGGAGATGGAAGAACCACCACCATCATCACCGGAAGTAGGAACGTCGTTGACGGAAGCACCACGTTCCGCTCTGCAACAGTTGCGGCGGTCGGCAATAATTTTCTGGCCCGGGACATTACCTTCCAAAACACCGCCGGTCCGTCCAAGCACCAGGCCGTGGCTCTACGTGTCGGGTCCGATCTCTCCGCCTTTTACCGATGTGGAATGGATGCCTATCAAGATACCCTCTACGTCCACTCCAACCGTCAATTCTTTACAGAGTGCCTGGTCGTCGGCACCGTTGATTTCATCTTCGGCAACGCCGTTGCCGTCCTTCAAAAGTGCGACATCCGTGCACGTCGACCCAACTCCGGCAGCAAGAACATGGTCACCGCCCAAAGCCGGACCGACCCTAACCAAAACACCGGAATTGTCATCCAACATTGTAATATTGCCGCCAACTCCGATCTCGCATCAGTTCAGAGCAGTTTCCCAACTTATCTCGGACGACCATGGAGGCAATACTCGAGGACGGTGGTTATGCAAACGGCGATAAGCAATGTGATAAACCCAGCCGGATGGCACATCTGGAACGGGGATTTCGCTCTCGCCACACTGTTCTACGGCGAGTATAAGAATACCGGAGCCGGAGCGGACACATCGAAGAGGGTGACATGGAAGGGGTTCAAAGTGATCACCAGTGATACTGAGGCAGAGGCTTTTACTCCGGGAAAATTCATCTCCGGTGGCAGTTGGTTGAGTAGGACTGGTTTTCCGTACAGTCTTGGTCTGTAG 1752 51.2 KTMVDVKPVMAGVPDSGSRPSVSELNKKKILFWVLSAVLLISDFIGVESRENSDEVDTFLPSHSIIKTSCCSTLYPDLCVSAITSVDGASKKVSSPKDVIELSLNITIEAVKKNYLAIKKLRSREGLTKREKVAVHDCLDNMEDTLYELYKVVEVLHLYPTKKSLAQHADDLKTLLSSTITNQESCLDGFSYDDADRKVGKVLLKAEIHIEKLCSNALAMIKNMTDTDIINESKMMGRKKLKEEVGHDDIKWPDWLSGSDRRLLQSTSVTPNVVVAADGSGNYRTVSEAVAAAPSRSSTRYVIRIKAGVYREYVNVPRTKTNIMFMGDGRTTTIITGSRNVVDGSTTFRSATVAAVGNNFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCGMDAYQDTLYVHSNRQFFTECLVVGTVDFIFGNAVAVLQKCDIRARRPNSGSKNMVTAQSRTDPNQNTGIVIQHCNIAANSDLASVQSSFPTYLGRPWRQYSRTVVMQTAISNVINPAGWHIWNGDFALATLFYGEYKNTGAGADTSKRVTWKGFKVITSDTEAEAFTPGKFISGGSWLSRTGFPYSLGL 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42213162 42215830 + Bda009613.1 Bda12g01041 18056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g01041 583 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Bda12g01041 583 PANTHER PECTINESTERASE 35 582 - -
Bda12g01041 583 Pfam Plant invertase/pectin methylesterase inhibitor 65 220 IPR006501 GO:0004857
Bda12g01041 583 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Bda12g01041 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 225 IPR035513 -
Bda12g01041 583 Gene3D - 266 583 IPR012334 -
Bda12g01041 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 61 224 IPR006501 GO:0004857
Bda12g01041 583 Pfam Pectinesterase 272 568 IPR000070 GO:0030599|GO:0042545
Bda12g01041 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 225 IPR035513 -
Bda12g01041 583 SMART PMEI_2 61 220 IPR006501 GO:0004857
Bda12g01041 583 CDD PMEI-like_3 68 225 - -
Bda12g01041 583 PANTHER PECTINESTERASE 35 582 - -
Bda12g01041 583 SUPERFAMILY Pectin lyase-like 269 582 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00625 Bda12g01041 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00629 Bda-Chr10:40316479 Bda12g01041 Bda-Chr12:42213162 2.03E-166 dispersed
Bda12g00427 Bda-Chr12:5239006 Bda12g01041 Bda-Chr12:42213162 2.39E-140 dispersed
Bda12g01041 Bda-Chr12:42213162 Bda12g01098 Bda-Chr12:42724439 0 dispersed
Bda12g01099 Bda-Chr12:42818532 Bda12g01041 Bda-Chr12:42213162 1.70E-135 dispersed
Bda01g01774 Bda-Chr1:53977604 Bda12g01041 Bda-Chr12:42213162 3.54E-132 transposed
Bda15g00760 Bda-Chr15:11202090 Bda12g01041 Bda-Chr12:42213162 4.86E-154 transposed
Bda12g01041 Bda-Chr12:42213162 Bda05g00625 Bda-Chr5:54329566 2.59E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g01041 K01051 - jre:109004988 797.349