Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g01055 ATGAGTAACTGGTTGGGTTTTTCGCTTACTCCACACCTGAGAATCCATGAAAGTTTCAATGGCGGACACGAGGAGGAAGTGCAGAATCAAGATGCAAATTATCCCCATTTTTCTGTCTTGCCATTGCGCTCTGATGGAACCCTTTGCGTTTCTGCTGATCCTTTCGGACGCATTAATGATTGGACATACGTGAGCTCAGCTAATGGCGGTGCCAATCCAAACGAAGAAAGTCCAAAACTCGAAGATTTCCTGGGAAGCTGCTACCCAAATTCTCCTCCGGCTGAAGCAAAACCCTTCTGCACACAAACCCAAGAAGAAGAAACCAGATTTCTGTCGAAAAACAATGTGAACGTAGCGCCAAATTTCAACACCCATAACGAGATGGAATTGGAAACAGGAGAGAATATCACAAACCCATCTCACTGCCTGATCCAACCTGATTATCCGCAAGCCTTAATCCCAAGTAACAATGCCTCTTACAAGTCTTGGTTGGGCCAAACCCCAGTATTTTCAGATCCGGCAAAATATTCCAGCGGGGGGAACGAGTCTAGTTTTCAGTCTCTGTCTCTAAGCATGAGCCCAATCTCACAGAATGTGGCCGTCGATCGCAAACGTCCAGTGGCCAGAGAACCAGTTCCAAGAAAATCAATCGATACTTTTGGACAGAGAACTTCGCAGTATCGCATAGATGGACAGGAAGATACGAAGCTCATCTCTGGGATAACAGCTGCAGAAAAGAAGGCCAAACCAGGAAAGGAAGGCAGGGTGAGATACTGTAATTCTTTCCAAGTTTCGTATTGTTCCAGAAATTTTGAACCCTCTGATCCTAGATTCAAATCAAATGATGTGTCGCACTTTTTGTTGTCGAATGTTAAACATCTAACGCTTTGTACTTACGAAAAAGAGCTGGAAGAGATGAAGAACATGAGCAGACAAGAGTTCGTCGCCAATCTGAGAAGGAAAAGTAGTGGGTTTTCGAGGGGAGCTTCGATGTACAGAGGGGTGACAAGCAGACACCATCAGCATGGACGATGGCAAGCCCGAATCGGAAGAGTTGCAGGAAACAAGGACTTGTACCTCGGCACATTCAGCACTCAAGAGGAAGCAGCGGAGGCCTACGACATTGCAGCGATCAAGTTCAGAGGAACCAGTGCTGTGACGAATTTCGACATTAATCGATACGACGTCAAGAGAATTTGCTCGAGCACGACTTTAATTGCGGGTGATCTTGCAAAACGTTCCCCGAAAGAGTGCTGTCCTCAACCCGCTCTCGATGACTATAATTCATGTGCGTCATCGACAACCTCTTCGCAGCACCTCTTGGCCATTAATGGCGAAGCTTCCGACGAGTACGCAGACATGGTGTGGAGTGGTAACGGGGAAGATCACTGTCATCAACGAGGGAGTAGTACATCCATGGTGGCTTCGAGTAGTAGAAATCCCTCCAATCCATCAAATGGCGAAATTGACGGCAATGGAGGGGACTACCACCCTCATGCTTATTTTCCGGGAGAGAATCGGTCCGATCAAAGCCGGGCAGGAAACGGAGGACCGGTTCATCAAGCTCCCATTTTTGCGCTGTGGAACGAATAG 1593 47.27 MSNWLGFSLTPHLRIHESFNGGHEEEVQNQDANYPHFSVLPLRSDGTLCVSADPFGRINDWTYVSSANGGANPNEESPKLEDFLGSCYPNSPPAEAKPFCTQTQEEETRFLSKNNVNVAPNFNTHNEMELETGENITNPSHCLIQPDYPQALIPSNNASYKSWLGQTPVFSDPAKYSSGGNESSFQSLSLSMSPISQNVAVDRKRPVAREPVPRKSIDTFGQRTSQYRIDGQEDTKLISGITAAEKKAKPGKEGRVRYCNSFQVSYCSRNFEPSDPRFKSNDVSHFLLSNVKHLTLCTYEKELEEMKNMSRQEFVANLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDINRYDVKRICSSTTLIAGDLAKRSPKECCPQPALDDYNSCASSTTSSQHLLAINGEASDEYADMVWSGNGEDHCHQRGSSTSMVASSSRNPSNPSNGEIDGNGGDYHPHAYFPGENRSDQSRAGNGGPVHQAPIFALWNE 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42319295 42321931 - Bda009629.1 Bda12g01055 18070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g01055 530 Gene3D AP2/ERF domain 331 392 IPR036955 GO:0003700|GO:0006355
Bda12g01055 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 471 - -
Bda12g01055 530 MobiDBLite consensus disorder prediction 456 530 - -
Bda12g01055 530 SMART rav1_2 331 396 IPR001471 GO:0003700|GO:0006355
Bda12g01055 530 ProSiteProfiles AP2/ERF domain profile. 331 390 IPR001471 GO:0003700|GO:0006355
Bda12g01055 530 MobiDBLite consensus disorder prediction 463 489 - -
Bda12g01055 530 CDD AP2 330 392 IPR001471 GO:0003700|GO:0006355
Bda12g01055 530 SUPERFAMILY DNA-binding domain 330 391 IPR016177 GO:0003677
Bda12g01055 530 Pfam AP2 domain 332 382 IPR001471 GO:0003700|GO:0006355
Bda12g01055 530 PANTHER PUTATIVE, EXPRESSED-RELATED 22 471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g01055 Bda-Chr12:42319295 Bda10g00018 Bda-Chr10:354206 1.79E-72 dispersed
Bda12g01055 Bda-Chr12:42319295 Bda03g00160 Bda-Chr3:1319585 4.87E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16828 PF00847 AP2 2.50E-08 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g01055 K09285 - qsu:112020712 486.108