Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda12g01070 | ATCATGTTGAAGGGGTTGTCGTTCAATCAGCAGACTCAGGAGGAAAACATGTCGAATTTGACTTCAGCATCTGGAGAAGCTAGCGTGTCTTCAGGCAACAGAAACGAGATTGGTTGCCAGTACTTTAGCCAACAACTTCAAACTGATCAACCCAGAAGTCTTCCGGGAAATCCAGACCCCGATGCAGAAGTGATAGCTTTATCTCCAAAAACACTGTTGGCAACGAATAGATTCGTCTGTGAGATCTGCAACAAAGGGTTTCAGAGAGATCAGAATCTTCAACTGCACAGAAGAGGGCACAATTTACCATGGAAACTGAAGCAAAGAACGAGCAAAGAGGTGAAGAAGAAGGTGTACGTCTGCCCAGAATCAAGCTGCGTCCACCATGATCCGTCGAGGGCGCTTGGAGACCTCACAGGAATCAAAAAGCATTTCAGCAGAAAACATGGAGAGAAGAGGTGGAAGTGTGACAAGTGTTCCAAGAAATATGCTGTTCAATCGGACTGGAAGGCTCATTCTAAAACCTGTGGCACCAGGGAGTACAGATGCGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATCACTCATCGTGCTTTCTGTGATGCTTTAGCCGAGGAAAATGCCAGAGCCATTACAGCCAATCCACTTCTCTCCTCATCTCATCAGCCCCTAGCATCTTCAATGGCTGCTCTTCAAGATCTCCCTCCATTTTCTTTGAAGAAAGAGCAGCAGAGCTTCGCTCTTCCGCCATGGTTACCCACTCCATCACCTCTGGACAACATTTCATCTCCATCCTCAATCTTCTCCCCGAGATTGAACCAAGACTTCACACAGCAAACCCAAAACCCTAACCCTAATCCTGGACCCACTCTCCCTTTCTATCAGTCAGCAGCTGCTTCCCCACACATGTCAGCCACTGCACTGCTGCAGAAGGCAGCTCAGATGGGAGCGACCATGAGTGCAAAGACAGATGTATCACAGCCCATACTCAGGACCCACAGCCAGGCTCACGTGTCTGATTCAACAACCAATACAGGCAGTGCTGTCAGAGCCTTTGCCCACAATTCTTTGTCCATATATGGGAATAAAGCTGTTTCTGTTTCTGTTCCTTCGGCCAGTTTTACTGGTGCAGCCCCAAGCGTCCTTCCTAACCCTACGTCGTTTCATGAGTTGATGATGACGTCTCTCTCTTCCCCGTCTGGTTTTGAAGATTCATCTTTTGAAGAAGCTTTTGGTGGGTTTATGAGCTCGAGAAAAGACGCATCTGCAAAAACAACCGCCGCCGGGGACGAAGTGGCCGCAGCCGTTGGTGGGGGTGAAGGTTTGACAAGAGATTTTCTGGGGCTGCGAGCTTTCTCTCACAGTGATATCCTAAACATTGCTGGTTTTAGCAACTGCCTAAACACATCTCAACCTCATCAGAATCAAACAAAGAGTGCATGGCAAGGTTAG | 1458 | 48.01 | IMLKGLSFNQQTQEENMSNLTSASGEASVSSGNRNEIGCQYFSQQLQTDQPRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFSRKHGEKRWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEENARAITANPLLSSSHQPLASSMAALQDLPPFSLKKEQQSFALPPWLPTPSPLDNISSPSSIFSPRLNQDFTQQTQNPNPNPGPTLPFYQSAAASPHMSATALLQKAAQMGATMSAKTDVSQPILRTHSQAHVSDSTTNTGSAVRAFAHNSLSIYGNKAVSVSVPSASFTGAAPSVLPNPTSFHELMMTSLSSPSGFEDSSFEEAFGGFMSSRKDASAKTTAAGDEVAAAVGGGEGLTRDFLGLRAFSHSDILNIAGFSNCLNTSQPHQNQTKSAWQG | 485 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 42429856 | 42431926 | + | Bda009644.1 | Bda12g01070 | 18085 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda12g01070 | 485 | Pfam | Zinc finger, C2H2 type | 78 | 100 | IPR013087 | - | |
| Bda12g01070 | 485 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 19 | 467 | - | - | |
| Bda12g01070 | 485 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Bda12g01070 | 485 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 174 | IPR036236 | - | |
| Bda12g01070 | 485 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
| Bda12g01070 | 485 | Gene3D | Classic Zinc Finger | 132 | 212 | - | - | |
| Bda12g01070 | 485 | SMART | c2h2final6 | 119 | 149 | IPR013087 | - | |
| Bda12g01070 | 485 | SMART | c2h2final6 | 154 | 174 | IPR013087 | - | |
| Bda12g01070 | 485 | SMART | c2h2final6 | 78 | 100 | IPR013087 | - | |
| Bda12g01070 | 485 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 100 | IPR013087 | - | |
| Bda12g01070 | 485 | Gene3D | Classic Zinc Finger | 58 | 128 | - | - | |
| Bda12g01070 | 485 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 19 | 467 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda09g00221 | Bda-Chr9:3046297 | Bda12g01070 | Bda-Chr12:42429856 | 8.19E-25 | dispersed | |
| Bda10g00123 | Bda-Chr10:3211502 | Bda12g01070 | Bda-Chr12:42429856 | 3.42E-117 | dispersed | |
| Bda10g00126 | Bda-Chr10:3491616 | Bda12g01070 | Bda-Chr12:42429856 | 2.94E-117 | dispersed | |
| Bda10g00560 | Bda-Chr10:39582000 | Bda12g01070 | Bda-Chr12:42429856 | 2.10E-118 | dispersed | |
| Bda10g01154 | Bda-Chr10:45605607 | Bda12g01070 | Bda-Chr12:42429856 | 6.08E-103 | dispersed | |
| Bda11g00845 | Bda-Chr11:8325063 | Bda12g01070 | Bda-Chr12:42429856 | 1.49E-26 | dispersed | |
| Bda12g01070 | Bda-Chr12:42429856 | Bda13g00610 | Bda-Chr13:7117099 | 8.58E-107 | dispersed | |
| Bda12g01070 | Bda-Chr12:42429856 | Bda04g00061 | Bda-Chr4:1006327 | 4.04E-118 | transposed | |
| Bda12g01070 | Bda-Chr12:42429856 | Bda01g00623 | Bda-Chr1:33235660 | 5.51E-114 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16831 | PF00096 | zf-C2H2 | 0.0049 | CL0361 | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda12g01070 | K25870 | - | jre:109012370 | 605.905 |