Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g01070 ATCATGTTGAAGGGGTTGTCGTTCAATCAGCAGACTCAGGAGGAAAACATGTCGAATTTGACTTCAGCATCTGGAGAAGCTAGCGTGTCTTCAGGCAACAGAAACGAGATTGGTTGCCAGTACTTTAGCCAACAACTTCAAACTGATCAACCCAGAAGTCTTCCGGGAAATCCAGACCCCGATGCAGAAGTGATAGCTTTATCTCCAAAAACACTGTTGGCAACGAATAGATTCGTCTGTGAGATCTGCAACAAAGGGTTTCAGAGAGATCAGAATCTTCAACTGCACAGAAGAGGGCACAATTTACCATGGAAACTGAAGCAAAGAACGAGCAAAGAGGTGAAGAAGAAGGTGTACGTCTGCCCAGAATCAAGCTGCGTCCACCATGATCCGTCGAGGGCGCTTGGAGACCTCACAGGAATCAAAAAGCATTTCAGCAGAAAACATGGAGAGAAGAGGTGGAAGTGTGACAAGTGTTCCAAGAAATATGCTGTTCAATCGGACTGGAAGGCTCATTCTAAAACCTGTGGCACCAGGGAGTACAGATGCGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATCACTCATCGTGCTTTCTGTGATGCTTTAGCCGAGGAAAATGCCAGAGCCATTACAGCCAATCCACTTCTCTCCTCATCTCATCAGCCCCTAGCATCTTCAATGGCTGCTCTTCAAGATCTCCCTCCATTTTCTTTGAAGAAAGAGCAGCAGAGCTTCGCTCTTCCGCCATGGTTACCCACTCCATCACCTCTGGACAACATTTCATCTCCATCCTCAATCTTCTCCCCGAGATTGAACCAAGACTTCACACAGCAAACCCAAAACCCTAACCCTAATCCTGGACCCACTCTCCCTTTCTATCAGTCAGCAGCTGCTTCCCCACACATGTCAGCCACTGCACTGCTGCAGAAGGCAGCTCAGATGGGAGCGACCATGAGTGCAAAGACAGATGTATCACAGCCCATACTCAGGACCCACAGCCAGGCTCACGTGTCTGATTCAACAACCAATACAGGCAGTGCTGTCAGAGCCTTTGCCCACAATTCTTTGTCCATATATGGGAATAAAGCTGTTTCTGTTTCTGTTCCTTCGGCCAGTTTTACTGGTGCAGCCCCAAGCGTCCTTCCTAACCCTACGTCGTTTCATGAGTTGATGATGACGTCTCTCTCTTCCCCGTCTGGTTTTGAAGATTCATCTTTTGAAGAAGCTTTTGGTGGGTTTATGAGCTCGAGAAAAGACGCATCTGCAAAAACAACCGCCGCCGGGGACGAAGTGGCCGCAGCCGTTGGTGGGGGTGAAGGTTTGACAAGAGATTTTCTGGGGCTGCGAGCTTTCTCTCACAGTGATATCCTAAACATTGCTGGTTTTAGCAACTGCCTAAACACATCTCAACCTCATCAGAATCAAACAAAGAGTGCATGGCAAGGTTAG 1458 48.01 IMLKGLSFNQQTQEENMSNLTSASGEASVSSGNRNEIGCQYFSQQLQTDQPRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFSRKHGEKRWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEENARAITANPLLSSSHQPLASSMAALQDLPPFSLKKEQQSFALPPWLPTPSPLDNISSPSSIFSPRLNQDFTQQTQNPNPNPGPTLPFYQSAAASPHMSATALLQKAAQMGATMSAKTDVSQPILRTHSQAHVSDSTTNTGSAVRAFAHNSLSIYGNKAVSVSVPSASFTGAAPSVLPNPTSFHELMMTSLSSPSGFEDSSFEEAFGGFMSSRKDASAKTTAAGDEVAAAVGGGEGLTRDFLGLRAFSHSDILNIAGFSNCLNTSQPHQNQTKSAWQG 485
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 42429856 42431926 + Bda009644.1 Bda12g01070 18085
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda12g01070 485 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Bda12g01070 485 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 19 467 - -
Bda12g01070 485 MobiDBLite consensus disorder prediction 1 31 - -
Bda12g01070 485 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Bda12g01070 485 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Bda12g01070 485 Gene3D Classic Zinc Finger 132 212 - -
Bda12g01070 485 SMART c2h2final6 119 149 IPR013087 -
Bda12g01070 485 SMART c2h2final6 154 174 IPR013087 -
Bda12g01070 485 SMART c2h2final6 78 100 IPR013087 -
Bda12g01070 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Bda12g01070 485 Gene3D Classic Zinc Finger 58 128 - -
Bda12g01070 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 467 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00221 Bda-Chr9:3046297 Bda12g01070 Bda-Chr12:42429856 8.19E-25 dispersed
Bda10g00123 Bda-Chr10:3211502 Bda12g01070 Bda-Chr12:42429856 3.42E-117 dispersed
Bda10g00126 Bda-Chr10:3491616 Bda12g01070 Bda-Chr12:42429856 2.94E-117 dispersed
Bda10g00560 Bda-Chr10:39582000 Bda12g01070 Bda-Chr12:42429856 2.10E-118 dispersed
Bda10g01154 Bda-Chr10:45605607 Bda12g01070 Bda-Chr12:42429856 6.08E-103 dispersed
Bda11g00845 Bda-Chr11:8325063 Bda12g01070 Bda-Chr12:42429856 1.49E-26 dispersed
Bda12g01070 Bda-Chr12:42429856 Bda13g00610 Bda-Chr13:7117099 8.58E-107 dispersed
Bda12g01070 Bda-Chr12:42429856 Bda04g00061 Bda-Chr4:1006327 4.04E-118 transposed
Bda12g01070 Bda-Chr12:42429856 Bda01g00623 Bda-Chr1:33235660 5.51E-114 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16831 PF00096 zf-C2H2 0.0049 CL0361 Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g01070 K25870 - jre:109012370 605.905