Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g01083 ATGACATCCACTCTTCAACAACAGCTCGCCACTGTTAGAACTTTTCCTCAAGGAACCAGAAACTGCTATAAAATAAATGTGAAAGTGGGCACTCGGTATCTCATCCGAGCTAGCTTTCTGTACGCAAATTTTGATGGAAAAAACACCACGCCTTCCTCATTTGATCTTCATTTCGGACCTAATTACTGGGCTACTGTGGCTTTACCAAGAGTAGCTGCTATCCAGCACGAGGAAATTATCCATATTTCCGATTCAAGTTATGCACAAGTCTGTCTCGTAAACACTGGATCTGGAACTCCATTTATATCATCTCTAGAGTTCAGACCTCTCCGGAACGACACCTATAGCAATCTCACTCTGTCGCTGCAACTATTCTTGCGACTTGACGTTGGCTCCAACAGCGTGGAACTTCTCATGAGAGTTCATCATAGAAACTTGATCAGCCTTGTTGGGTACTGCAATGAAGGGCCTCATATGGGGCTCATCTACGAATACATGAGCAGAGGAAATCTAGGATCTCTGTTAGCTGATGAAAAGGCGGGTTTGCTGTCATGGGAAAAGAGACTGCACATAGCACTCGATGCAGCGCTAGGTTTGCACTTACCACAGAAATTTATCAAAAGATTTGGCATTATTCTTTCTTCATTCAATTTTTTCTCAACTGTAGGATTGGAGTATCTGCATAATGGTTCCAGGCCAGCCATGGTGCACAGAGATGTCAAGTGTGCAAACATCTTGCTAAATGACATTTTCCAAGCAAAACTTGCTGATTTCGGTCTTTCTCGATCGTTTCCAACCGAGGGTGGCGCCACTCATATCACCACCAATGTCGTTGGAACTCCGGGCTACCTCGATCCTGAGTACTACGTATCATATAGATTAAACGAGAAGAGCGACATTTATAGCTTCGGAATCGTGATCCTGGAAATCGTGACTGGACGGCCGGTTCTTGTGAAGAATCACGAGAAGAGTCACATAACTCAATGGGTGGATTTCATGCTGAGTCAAGGAGACATAAGCACCATAATAGATCCAAGAATGAAGATGGATTATGACGTGAACTCAATTTGGAAAGCTGTTGAAGTTGCAATGTCATCAGCTTCTCATAGCTCTGCAGGAAGACCAACCATGAGCGAGGTGGTCAAGGAGCTCAAGGAGTGTCTGGACATAGAGATAGCCAACAAAGCTGGTACCACCCAATCAACTGCTTCCTTCAACAGCAACTTGGCTTCTGGATTTGGCCCCGTTGCAAGGTAG 1257 44.63 MTSTLQQQLATVRTFPQGTRNCYKINVKVGTRYLIRASFLYANFDGKNTTPSSFDLHFGPNYWATVALPRVAAIQHEEIIHISDSSYAQVCLVNTGSGTPFISSLEFRPLRNDTYSNLTLSLQLFLRLDVGSNSVELLMRVHHRNLISLVGYCNEGPHMGLIYEYMSRGNLGSLLADEKAGLLSWEKRLHIALDAALGLHLPQKFIKRFGIILSSFNFFSTVGLEYLHNGSRPAMVHRDVKCANILLNDIFQAKLADFGLSRSFPTEGGATHITTNVVGTPGYLDPEYYVSYRLNEKSDIYSFGIVILEIVTGRPVLVKNHEKSHITQWVDFMLSQGDISTIIDPRMKMDYDVNSIWKAVEVAMSSASHSSAGRPTMSEVVKELKECLDIEIANKAGTTQSTASFNSNLASGFGPVAR 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42534619 42538032 - Bda009658.1 Bda12g01083 18098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g01083 418 SUPERFAMILY Protein kinase-like (PK-like) 135 384 IPR011009 -
Bda12g01083 418 Gene3D Phosphorylase Kinase; domain 1 128 166 - -
Bda12g01083 418 Gene3D Transferase(Phosphotransferase) domain 1 167 408 - -
Bda12g01083 418 PANTHER OS07G0107800 PROTEIN-RELATED 223 418 - -
Bda12g01083 418 PANTHER OS07G0107800 PROTEIN-RELATED 4 132 - -
Bda12g01083 418 ProSiteProfiles Protein kinase domain profile. 76 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g01083 418 PANTHER BNAC03G59870D PROTEIN 223 418 - -
Bda12g01083 418 PANTHER BNAC03G59870D PROTEIN 4 132 - -
Bda12g01083 418 PANTHER BNAC03G59870D PROTEIN 134 199 - -
Bda12g01083 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Bda12g01083 418 Pfam Malectin-like domain 3 134 IPR024788 -
Bda12g01083 418 SMART serkin_6 76 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g01083 418 PANTHER OS07G0107800 PROTEIN-RELATED 134 199 - -
Bda12g01083 418 Pfam Protein kinase domain 135 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g01083 Bda-Chr12:42534619 Bda12g01092 Bda-Chr12:42670307 2.16E-168 dispersed
Bda10g00842 Bda-Chr10:42773165 Bda12g01083 Bda-Chr12:42534619 9.93E-46 wgd
Bda12g01083 Bda-Chr12:42534619 Bda12g01091 Bda-Chr12:42635243 6.62E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69981 PF00069 Pkinase 1.30E-27 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g01083 - - csv:101214989 341.273