Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g01098 ATGGAAGACACCCTCTACGAGCTCTACAAAGTTGTAGAGGTTCTCCATTTGTACCCAACTAAGAAATCTCTAGCCCAGCACGCCGACGACCTTAAGACTTTACTCAGCTCCACAATCACCAACCAGGAATCTTGCTTAGACGGGTTCTCTTACGACGATGCCGACAGAAAGGTGGGGAAGGTGCTGCTCAAGGCGGAGATCCATATCGAGAAACTGTGCAGCAATGCTTTGGCGATGATTAAGAACATGACCGACACTGATATAATCAACGAGAGTAAAATGATGGGAAGGAAGAAGCTGAAGGAGGAGGTGGGTCACGACGACATAAAGTGGCCGGATTGGCTGTCGGGTTCTGACAGACGGCTGTTGCAGTCGACTTCAGTGACACCGAATGTGGTGGTGGCAGCCGACGGCAGTGGGGACTACCGGACAGTCTCGGAAGCAGTGGCAGCCGCACCGTCAAGGAGTTCTACCAGATATGTTATCAGAATCAAGGCGGGAGTCTACCGGGAATATGTAAATGTGCCGAGGACCAAGACCAATATCATGTTTATGGGAGATGGAAGAACCACCACCATCATCACCGGAAGTAGGAACGTCGTTGACGGAAGCACCACGTTCCGCTCTGCAACAGTTGCGGCGGTCGGCAATAATTTTCTGGCCCGGGACATTACCTTCCAAAACACCGCCGGTCCGTCCAAGCACCAGGCCGTGGCTCTACGTGTCGGGTCCGATCTCTCCGCCTTTTACCGATGTGGAATGGATGCCTATCAAGATACCCTCTACGTCCACTCCAACCGTCAATTCTTTACAGAGTGCCTGGTCGTCGGCACCGTTGATTTCATCTTCGGCAACGCCGTTGCCGTCCTTCAAAAGTGCGACATCCGTGCACGTCGACCCAACTCCGGCAGCAAGAACATGGTCACCGCCCAAAGCCGGACCGACCCTAACCAAAACACCGGAATTGTCATCCAACATTGTAATATTGCCGCCAACTCCGATCTCGCATCAGTTCAGAGCAGTTTCCCAACTTATCTCGGACGACCATGGAGGCAATACTCGAGGACGGTGGTTATGCAAACGGCGATAAGCAATGTGATAAACCCAGCCGGATGGCACATCTGGAACGGGGATTTCGCTCTCGCCACACTGTTCTACGGCGAGTATAAGAATACCGGAGCCGGAGCGGACACATCGAAGAGGGTGACATGGAAGGGGTTCAAAGTGATCACCAGTGATACTGAGGCAGAGGCTTTTACTCCGGGAAAATTCATCTCCGGTGGCAGTTGGTTGAGTAGGACTGGTTTTCCGTACAGTCTTGGTCTGTAG 1329 52.52 MEDTLYELYKVVEVLHLYPTKKSLAQHADDLKTLLSSTITNQESCLDGFSYDDADRKVGKVLLKAEIHIEKLCSNALAMIKNMTDTDIINESKMMGRKKLKEEVGHDDIKWPDWLSGSDRRLLQSTSVTPNVVVAADGSGDYRTVSEAVAAAPSRSSTRYVIRIKAGVYREYVNVPRTKTNIMFMGDGRTTTIITGSRNVVDGSTTFRSATVAAVGNNFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCGMDAYQDTLYVHSNRQFFTECLVVGTVDFIFGNAVAVLQKCDIRARRPNSGSKNMVTAQSRTDPNQNTGIVIQHCNIAANSDLASVQSSFPTYLGRPWRQYSRTVVMQTAISNVINPAGWHIWNGDFALATLFYGEYKNTGAGADTSKRVTWKGFKVITSDTEAEAFTPGKFISGGSWLSRTGFPYSLGL 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42724439 42726675 + Bda009675.1 Bda12g01098 18113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g01098 442 PANTHER PECTINESTERASE 2 441 - -
Bda12g01098 442 Gene3D - 125 442 IPR012334 -
Bda12g01098 442 Pfam Plant invertase/pectin methylesterase inhibitor 2 79 IPR006501 GO:0004857
Bda12g01098 442 PANTHER PECTINESTERASE 2 441 - -
Bda12g01098 442 Pfam Pectinesterase 131 427 IPR000070 GO:0030599|GO:0042545
Bda12g01098 442 SUPERFAMILY Pectin lyase-like 128 441 IPR011050 -
Bda12g01098 442 CDD PMEI-like_3 1 84 - -
Bda12g01098 442 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 84 IPR035513 -
Bda12g01098 442 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 84 IPR035513 -
Bda12g01098 442 ProSitePatterns Pectinesterase signature 1. 156 175 IPR018040 -
Bda12g01098 442 ProSitePatterns Pectinesterase signature 2. 275 284 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g01041 Bda-Chr12:42213162 Bda12g01098 Bda-Chr12:42724439 0 dispersed
Bda12g01098 Bda-Chr12:42724439 Bda15g00760 Bda-Chr15:11202090 1.05E-147 dispersed
Bda12g01098 Bda-Chr12:42724439 Bda12g01099 Bda-Chr12:42818532 2.52E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g01098 K01051 - twl:119983543 688.337