Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda12g01099 | ATGGATGCCTTTCAAGATACCCTCTACGTCCACTCCAACCGTCAATTCTTTACAGAGTGCCTGGTCGTCGGCACCGTTGATTTCATCTTCGGCAACGCCGTTGCCGTCCTTCAAAAGTGCGACATCCGTGCACGTCGACCCAACTCCGGCAGCAAGAACATGGTCACCGCCCAAAGCCGGACCGACCCTAACCAAAACACCGGAATTGTCATCCAACATTGTAATATTGCCGCCAACTCCGATCTCGCATCAGTTCAGAGCAGTTTCCCAACTTATCTCGGACGACCATGGAGGCAATACTCGAGGACGGTGGTTATGCAAACGGCGATGAGCAATGTGATACACCCAGACGGATGGCACATCTGGAACGGGGATTTCGCTCTCGCCACACTGTTCTACGGCGAGTATAAGAATACCGGAACCGGAGCGGACACATCGAAGAGGGTGTCATGGAAGGGGTTCAAAGTGATCACCAGTGATACTGAGGCAGAGGCTTTTACTCCGGGAAAATTCATCTCCGGTGGCAGTTGGTTGAGTAGCACTGGTTTTCCGTACACTCTTGGCCTGTAG | 570 | 52.63 | MDAFQDTLYVHSNRQFFTECLVVGTVDFIFGNAVAVLQKCDIRARRPNSGSKNMVTAQSRTDPNQNTGIVIQHCNIAANSDLASVQSSFPTYLGRPWRQYSRTVVMQTAMSNVIHPDGWHIWNGDFALATLFYGEYKNTGTGADTSKRVSWKGFKVITSDTEAEAFTPGKFISGGSWLSSTGFPYTLGL | 189 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 42818532 | 42819101 | + | Bda009681.1 | Bda12g01099 | 18114 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda12g01099 | 189 | ProSitePatterns | Pectinesterase signature 2. | 22 | 31 | IPR033131 | - | |
| Bda12g01099 | 189 | Gene3D | - | 1 | 189 | IPR012334 | - | |
| Bda12g01099 | 189 | Pfam | Pectinesterase | 1 | 174 | IPR000070 | GO:0030599|GO:0042545 | |
| Bda12g01099 | 189 | PANTHER | PECTINESTERASE | 3 | 188 | - | - | |
| Bda12g01099 | 189 | PANTHER | PECTINESTERASE | 3 | 188 | - | - | |
| Bda12g01099 | 189 | SUPERFAMILY | Pectin lyase-like | 3 | 188 | IPR011050 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda12g01099 | Bda-Chr12:42818532 | Bda12g01041 | Bda-Chr12:42213162 | 1.70E-135 | dispersed | |
| Bda12g01098 | Bda-Chr12:42724439 | Bda12g01099 | Bda-Chr12:42818532 | 2.52E-136 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda12g01099 | K01051 | - | rcu:8276562 | 315.464 |