Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00001 ATGAATCTTGGCCCAATTCCAAGTCGGTGGAAAGGGCTTTGCCAGACTGGTGTTAAATTCACTGCCTCCAACTGTAACCGTAAAATTGTTGGCGCAAGATTCTTTACCAAAGGTCATGAAGCAGGAAATATCGCGGGTCCGATTGTCGGAATCAATGAAACGGTTGAGTACCGTTCGCCAAGAGATGCCGACGGTCATGGTACCCACACGGCTTCAACTGCTGCAGGACGGTATGCGTTTGAAGCTAGCATGGAGGGGTATGCTTCGGGTATTGCGAAGGGTGTAGCTCCAAAAGCCCGTTTAGCGGTTTACAAGGTTTGTTGGAGAAATTCTGGCTGTTTCGATTCAGATATTCTGGCAGCGTTCGACGCCGCAGTTAATGACGGCGTCGATGTCATTTCGATTTCTATCGGTGGCGGTGATGGTCTTTCGTCACCGTACTATCTCGATCCAATCGCAATAGGATCTTATGGCGCTGTTTCGAAGGGGATCTTCGTTTCCTCATCGGCTGGTAACGATGGACCCAATGAAATGACAGTCACGAACCTCGCACCTTGGCTCACTACTGTTGGAGCCGGCACTATTGACCGCAATTTCCCGGCAACAGTAATTCTCGGCGACGGGCGTAAAATTCCCGGTGTGTCACTTTATGCCGGAGCTCCGTTAAACGGCAATATGTATTCTCTCGTTTATCCTGGGAAAAATGGAATTCTTTCAGCTTCCCTCTGTATGGAAAATTCTCTCGACCCTAACCTCGTTCGCGGTAAAATTGTGATCTGCGATAGAGGAAGTAATCCCCGTGTGGCTAAAGGCTTGGTAGTGAAGAAAGCCGGAGGAGTTGGAATGATTCTTGCCAATGGCGTGAGCAATGGTGAAGGACTGGTAGGTGATGCTCATCTTCTTCCTGCTTGCGCAATAGGCTCGGACGAAGGAGACATAATAAAGGCATATGTAACTTCATCTAAAAGTCCGACGGCTACCATTGATTTTCAAGGTACTGTTGTTGGCATAAAGCCTGCTCCGGTAGTGGCTTCGTTCTCTGCGAGAGGACCAAATGGATTGAACCCAGAGATTTTGAAGCCAGATTTGATCGCACCGGGGGTAAATATTCTCGCTGGTTGGACTGATGCTGTTGGTCCGACTGGTTTGGATTCGGACACAAGAAAAACAGAGTTCAATATTTTGTCTGGAACATCAATGGCTTGCCCTCATGTTAGCGGCGCTGCAGCTTTGCTCAAATCTGCCCACCCAGATTGGAATCCGGCTGTCATAAGATCTGCTATGATGACGACTGCGAGTGTAATTGACAACGGACGGCAGCCGATGACCGAGGAATCCACCGGAAAGCCGTCTAATCCTTACGATTTTGGTTCCGGCCATGTTAATCTGGGTCTGGCAATGGATCCTGGACTCGTCTATGATATTACAAACAGCGATTATGTGAACTTTTTATGCTCTATTGGATACGGGCCTAAGTTGATTCAGGTTATCACTAGAACCCCAGAGAAATGTCCGGAAAGGAAACCGTTGCCGGAGAACCTGAATTACCCATCAATGGCAGCATTGTTTCCCAGCTCGGCAGCAGGTGTGTCGACGAAATCATTCATTCGAACGGTGACGAATGTGGGTCCTCCTAATTCGACATACAGGGCAAAAATCGAAGCTCCAAAGGGAATGACGGTGAAGGTAAAGCCAGCGAAGCTAGTGTTTAGTGAAAGAGTGAAGAAGCAAAGTTTTGAGGTTACAATTTCGGGGAATAGTGGGAAAGTGGAAATGGGTGAAGCGGGTGCAGCCTTCGGGTCGGTTAGTTGGGTGGATGGAAAGCATGTGGTTCGGAGCCCCATCATTGTGAGTCAAATAGATTCGTTGTGA 1872 48.34 MNLGPIPSRWKGLCQTGVKFTASNCNRKIVGARFFTKGHEAGNIAGPIVGINETVEYRSPRDADGHGTHTASTAAGRYAFEASMEGYASGIAKGVAPKARLAVYKVCWRNSGCFDSDILAAFDAAVNDGVDVISISIGGGDGLSSPYYLDPIAIGSYGAVSKGIFVSSSAGNDGPNEMTVTNLAPWLTTVGAGTIDRNFPATVILGDGRKIPGVSLYAGAPLNGNMYSLVYPGKNGILSASLCMENSLDPNLVRGKIVICDRGSNPRVAKGLVVKKAGGVGMILANGVSNGEGLVGDAHLLPACAIGSDEGDIIKAYVTSSKSPTATIDFQGTVVGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAGWTDAVGPTGLDSDTRKTEFNILSGTSMACPHVSGAAALLKSAHPDWNPAVIRSAMMTTASVIDNGRQPMTEESTGKPSNPYDFGSGHVNLGLAMDPGLVYDITNSDYVNFLCSIGYGPKLIQVITRTPEKCPERKPLPENLNYPSMAALFPSSAAGVSTKSFIRTVTNVGPPNSTYRAKIEAPKGMTVKVKPAKLVFSERVKKQSFEVTISGNSGKVEMGEAGAAFGSVSWVDGKHVVRSPIIVSQIDSL 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 2000 3871 - Bda000839.1 Bda13g00001 18132
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00001 623 SUPERFAMILY PA domain 250 321 IPR046450 -
Bda13g00001 623 ProSitePatterns Serine proteases, subtilase family, serine active site. 397 407 IPR023828 -
Bda13g00001 623 PANTHER XYLEM SERINE PROTEINASE 1 3 617 - -
Bda13g00001 623 SUPERFAMILY Subtilisin-like 24 471 IPR036852 GO:0004252|GO:0006508
Bda13g00001 623 CDD PA_subtilisin_like 202 328 - -
Bda13g00001 623 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 3 617 IPR045051 -
Bda13g00001 623 Gene3D - 484 620 - -
Bda13g00001 623 Pfam Subtilase family 51 441 IPR000209 GO:0006508|GO:0008236
Bda13g00001 623 PRINTS Subtilisin serine protease family (S8) signature 62 75 IPR015500 -
Bda13g00001 623 PRINTS Subtilisin serine protease family (S8) signature 396 412 IPR015500 -
Bda13g00001 623 ProSiteProfiles Serine proteases, subtilase domain profile. 1 467 - -
Bda13g00001 623 CDD Peptidases_S8_3 3 433 IPR034197 -
Bda13g00001 623 Gene3D - 196 335 - -
Bda13g00001 623 Pfam PA domain 228 313 IPR003137 -
Bda13g00001 623 Gene3D Peptidase S8/S53 domain 3 480 IPR036852 GO:0004252|GO:0006508
Bda13g00001 623 Pfam Fibronectin type-III domain 513 617 IPR041469 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01464 Bda-Chr11:20507518 Bda13g00001 Bda-Chr13:2000 0 dispersed
Bda13g00001 Bda-Chr13:2000 Bda02g00348 Bda-Chr2:43818577 0 dispersed
Bda13g00001 Bda-Chr13:2000 Bda10g00887 Bda-Chr10:43336039 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00001 - - csv:101217844 1049.65