Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00024 ATGAGTGGGAAGGCATTTGGTAATTCTGGTAAACAGTTTTATGCATCGGAGAAGGCTGTCTGGGAAGACCATACATTGCATAAAGATGAAAACAATATTTGTCAACAAACAGGAGAAGAATTTTCTCCTGCATTTTTGAGGGATCGTGCTGCCATAGGAAGATTTTCAGCCATAACTGATCGGCAACAGCAAAACGGAGGTGGGTCGAGCTCAGACTTATCTGTGATGGGGACAGGATATTCACCTGAAAAGGAGAATAGGCCTTGTCCATCTTCTTCACCATTTTGTATGGTAGACTCCCCTCAGCCCTATCATCCTTACGGCCAAGGAGGATTTTCTGAGGCTTCCTTCTCTGGAAAGATGAAATTCCTCTGCAGCTTTGGGGGACGAATATTACCCAGACCAAGCGATGGAAAACTCAGATACGTCGGCGGAGAAACACGCATAATGTCTATAAGAAAGAACATCACCTGGGAAGAAGTTAGAAAGAAGACTTGTGGAATATGCAAACAATCTCATACTATAAAATATCAGCTTCCCGGCGAAGATCTCGATGCACTCATCTCCGTTTGTTCTGACGAGGATCTTCATCATATGATAGAGGAATATCAAGAGCTAGAAAGAATCGAGGGTTCTCAAAGATTGCGAATATTTCTTGTTTCTTCAAATGAATCTGAAAGCCCGAGCTCTGTTGAAGCAAGAGTCGTAGAGGCGAGTGATGCAGACTATCAGTACGTTGCAGCTGTAAATGGGATGGTGGATAGAAGTCCTCAGAAGAACTCCAATGGACAAAGTTTGTCAAGCCAGACTAGCCAGCTGGGGCTCATCTCAGATTCTAGCCCAAACTTCTGCAGGGACTCTCCTTCGTCTGCACATATCAAAGAGTTCAAGGATATGAGTCCAGCTTCCGCAGAATTGTCTGGAACAATATCAAGACATCCTAGTCATATCCTAACTCCGATTCGGATTCCTGAGAAGTCATTCAATCAATCCCCATATGTATCTCCCAATCCTGTTCATCGAAATGATTTTAAGAATTCTGACATGAAATTATGCGGGAATTCTCCATACATGCTTGAAAACCCGTATTACGTTGACCCATCGACTTGTTACAATAATCTTCGTCATTGGTCTCCAATATTAAATCATGAGCAAAATACATGTTCTGAACAGATTGGCCAATCATTCATGCCCCATAATACTTACGATATTCACTTCCTCAGCCAAACTCCGAGCAAAGATTCAGTCCCGTCTCCAAGTTGCAGGGTTGAGAATATTGTTTGTAATTATGACAAGGTCTTCCCCGACGCAGATGTGAATTGTCCGCATTACAAAATGATGCATCTGTTTTCGGACTCACAGCTGCATGAAAGGTCTGAAAGGTCCAGCAATGGAGTAGAAGAAGCTGCAGTGCCACTGACACCGTTGAATCTCGAAAAAGAGGAATCAACTTCACTGCTATTGCCAAGTGCCTTGCAGGAATGGCCAGCTCAATGGAAAGAAATCGTTCAAGGAAAACAGCCGGACATCAAATGTGGAAATCATCCAACTTTGATGGCTGACTTTTGCAAGGGAAAGTCTGAAGAATTCCAGGAGATTTTAAACTGGATGGGGAAAAATGATAACTATTCTGACCAAATCAGAAGAAATTTTAACTTCGAGTCTGATGATAACACTCTGGAACTTAACAACTTGAGAGCAGCTGATTTAGTTAACTTAACAGATAACATGTGGGAACACTCCCATAGTTATAAAACAGAGTTAAATCCTTCAGAGTTCATTCATAAGAGCCAAAATTCTATCATGGATCAGCAATGTACTGGAAATGAAGCGTTAAGTAGCCAACCACTTTCACATGAATCTCCTTATTTAATGAAGGTTGCATCTCAAGCTTTGTCCAATCAACGAACCACAGATGATGCCCCTAGTTTCACTGGTTCTTCTCCAAAAATTGAGATTTCTCCGCCGGGCTTTAATCCTGTGAGTTATAGTATGCATACGGTTGAAAACACAGTTCTTAGCGGCAAGTCATCGAATGGTGTAGAACCTGTCTGTGCCAAATCAGAACACTCAAATAGCTATCATGCCAATGATGTTATTGGTTCGACTGTTCTGGTTGAAGACGTCACAGATGGTATGCCTCCTAGTCCTGACATACCTTTGTCATCAAAAGTTGTCCCATGGATCGAGGATGAGGCCAGTGATGGATTTCAATCTCCTAAAGGATCAGAAGGTCGAAGTTCTTGTCCAGATTCTGAATACGAGGATTTAGAAGGTGATGGAAGAGACCCAAGTGTTTCCATAGGTGATGCTGCAATTGCTGAGATTGAAGCTGGAATCTATGGTTTACAGATAATAAAGAATGCCGATCTAGAAGATCTGCAGGAGTTGGGCTCCGGAACATTCGGAACAGTTTATCACGGAAAGTGGAGAGGGACAGATGTCGCAATCAAGAGAATAAAAAAGAGTTGCTTTTCGGGCAGATCGTCTGAGCAAGATCGATTGATGAAAGACTTCTGGAGAGAGGCTCGAATTTTGTCGACTCTTCACCACCCAAATGTATTAGCATTCTATGGCGTGGTTCCTGATGGGCCAGAGGGAACATTGGCGACTGTAACCGAGTACATGGTCAATGGATCGTTGAGACATGTTCTATTGAAGAAGGAGAGGGTGCTAGATCGAAGGAAGCGGCTCATCATTGCGATGGACGCAGCATTTGGAATGGAATATTTACATTTGAAAAATATAGTCCATTTTGATCTGAAATGTGACAATCTGCTTGTAAATTTGAGAGATCCTGAGCGACCCATATGCAAGGTTGGAGATTTTGGGTTGTCAAGAATTAAGCGCAACACCCTTGTGACTGGTGGTGTGAGAGGAACTCTCCCATGGATGGCTCCGGAGTTATTGGATGGTAGTAGTAGCCAGGTGTCTGAGAAGGTCGATGTTTTCTCATTCGGAGTTGCGATGTGGGAGATTTTGACAGGAGAAGAGCCATACGCTAATATGCATTGTGGAGCTATAATAGGAGGAATTGTAAACAACACATTGAGGCCTCCTATTCCAAAACGATGTGATCCTGAATGGAAAAGCTTGATGGAGGAATGTTGGTCTCCCGACCCTAAGTCTCGGCCGTCATTTACTGAGATAACAAATCGACTGCGAGAAATGTCAATTTCTCTCCAAAAGAAGCGTCCTAATCTGAAGAGACTGGAGTCTAATTATAAGTAG 3231 42.8 MSGKAFGNSGKQFYASEKAVWEDHTLHKDENNICQQTGEEFSPAFLRDRAAIGRFSAITDRQQQNGGGSSSDLSVMGTGYSPEKENRPCPSSSPFCMVDSPQPYHPYGQGGFSEASFSGKMKFLCSFGGRILPRPSDGKLRYVGGETRIMSIRKNITWEEVRKKTCGICKQSHTIKYQLPGEDLDALISVCSDEDLHHMIEEYQELERIEGSQRLRIFLVSSNESESPSSVEARVVEASDADYQYVAAVNGMVDRSPQKNSNGQSLSSQTSQLGLISDSSPNFCRDSPSSAHIKEFKDMSPASAELSGTISRHPSHILTPIRIPEKSFNQSPYVSPNPVHRNDFKNSDMKLCGNSPYMLENPYYVDPSTCYNNLRHWSPILNHEQNTCSEQIGQSFMPHNTYDIHFLSQTPSKDSVPSPSCRVENIVCNYDKVFPDADVNCPHYKMMHLFSDSQLHERSERSSNGVEEAAVPLTPLNLEKEESTSLLLPSALQEWPAQWKEIVQGKQPDIKCGNHPTLMADFCKGKSEEFQEILNWMGKNDNYSDQIRRNFNFESDDNTLELNNLRAADLVNLTDNMWEHSHSYKTELNPSEFIHKSQNSIMDQQCTGNEALSSQPLSHESPYLMKVASQALSNQRTTDDAPSFTGSSPKIEISPPGFNPVSYSMHTVENTVLSGKSSNGVEPVCAKSEHSNSYHANDVIGSTVLVEDVTDGMPPSPDIPLSSKVVPWIEDEASDGFQSPKGSEGRSSCPDSEYEDLEGDGRDPSVSIGDAAIAEIEAGIYGLQIIKNADLEDLQELGSGTFGTVYHGKWRGTDVAIKRIKKSCFSGRSSEQDRLMKDFWREARILSTLHHPNVLAFYGVVPDGPEGTLATVTEYMVNGSLRHVLLKKERVLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVTGGVRGTLPWMAPELLDGSSSQVSEKVDVFSFGVAMWEILTGEEPYANMHCGAIIGGIVNNTLRPPIPKRCDPEWKSLMEECWSPDPKSRPSFTEITNRLREMSISLQKKRPNLKRLESNYK 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 450224 454322 - Bda000866.1 Bda13g00024 18155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00024 1076 Pfam PB1 domain 137 221 IPR000270 GO:0005515
Bda13g00024 1076 PRINTS Tyrosine kinase catalytic domain signature 1025 1047 IPR001245 GO:0004672|GO:0006468
Bda13g00024 1076 PRINTS Tyrosine kinase catalytic domain signature 981 1003 IPR001245 GO:0004672|GO:0006468
Bda13g00024 1076 PRINTS Tyrosine kinase catalytic domain signature 873 886 IPR001245 GO:0004672|GO:0006468
Bda13g00024 1076 PRINTS Tyrosine kinase catalytic domain signature 910 928 IPR001245 GO:0004672|GO:0006468
Bda13g00024 1076 Gene3D - 139 223 - -
Bda13g00024 1076 MobiDBLite consensus disorder prediction 57 77 - -
Bda13g00024 1076 PANTHER SERINE-THREONINE PROTEIN KINASE 581 1068 - -
Bda13g00024 1076 CDD PB1_UP2 124 219 - -
Bda13g00024 1076 SMART PB1_new 135 222 IPR000270 GO:0005515
Bda13g00024 1076 SUPERFAMILY CAD & PB1 domains 136 227 - -
Bda13g00024 1076 MobiDBLite consensus disorder prediction 748 763 - -
Bda13g00024 1076 SMART serkin_6 791 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00024 1076 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 581 1068 - -
Bda13g00024 1076 MobiDBLite consensus disorder prediction 634 652 - -
Bda13g00024 1076 MobiDBLite consensus disorder prediction 634 657 - -
Bda13g00024 1076 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 90 597 - -
Bda13g00024 1076 CDD STKc_MAP3K-like 797 1054 - -
Bda13g00024 1076 MobiDBLite consensus disorder prediction 254 279 - -
Bda13g00024 1076 MobiDBLite consensus disorder prediction 57 84 - -
Bda13g00024 1076 PANTHER SERINE-THREONINE PROTEIN KINASE 90 597 - -
Bda13g00024 1076 Gene3D Phosphorylase Kinase; domain 1 784 878 - -
Bda13g00024 1076 ProSitePatterns Protein kinases ATP-binding region signature. 797 822 IPR017441 GO:0005524
Bda13g00024 1076 Gene3D Transferase(Phosphotransferase) domain 1 879 1075 - -
Bda13g00024 1076 Pfam Protein tyrosine and serine/threonine kinase 794 1054 IPR001245 GO:0004672|GO:0006468
Bda13g00024 1076 ProSiteProfiles Protein kinase domain profile. 791 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00024 1076 SUPERFAMILY Protein kinase-like (PK-like) 784 1053 IPR011009 -
Bda13g00024 1076 MobiDBLite consensus disorder prediction 733 766 - -
Bda13g00024 1076 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00024 - - - jre:108988446 1038.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01923 Bda-Chr1:55428825 Bda13g00024 Bda-Chr13:450224 4.88E-26 dispersed
Bda06g00238 Bda-Chr6:4222295 Bda13g00024 Bda-Chr13:450224 9.89E-43 dispersed
Bda13g00024 Bda-Chr13:450224 Bda08g00332 Bda-Chr8:3407379 4.20E-53 dispersed
Bda13g00024 Bda-Chr13:450224 Bda01g01930 Bda-Chr1:55558419 1.27E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69985 PF07714 PK_Tyr_Ser-Thr 1.30E-62 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00024 Bda_Chr13 FPKM 0.109248 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0