Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00026 CTTGAGCTCTCGAATTCTAATTTCCCAATTCCCAAATCCTCGTCACAATTAACTACATTCAGTAATTTAAGCGTTTTGACCTGTTTTGTTACGTCCGACAGGGGGGAAGAGGGGGAGGACCTGAAATCAAATGAGCACGCAGTTGAGGACCCAGAGGAGATTGCTTCAATGGTTGACTTGAGTATCCGAAACAGCTCAGAAAGGAGGAACCTTGGGTTTTTCTCCTGTGGAACAGGAAACCCAATCGACGACTGCTGGCGCTGCGATCCAAACTGGCACCTTAACAGGAAACGGCTGGCCGATTGCAGTATCGGCTTCGGGAGGAACGCTATCGGAGGCCGTGACGGCAGTTTCTATGTGGTCACAGATCCAGGCGACGATGATCCTGTCAACCCAAAGATCGGAACACTGCGGCATGCGGTCATCCAAGATAGCCCTCTCTGGATCATATTCAAACGAGACATGGTGATTCGATTGAAACAGGAGTTAATCGTTAATAGTTTCAAGACCATTGATGGGCGTGGAGCTGATGTGCATATAGCTAACGGGGCATGCATTACCATCCAGTTTGTGACCAACGTCATTGTCCATGGTCTCTCCATCCATGATTGTAAACCTACAGGGAATGCTATGGTTAGAAGCTCTGAAACCCATGTGGGATGGAGGACAATGGCGGATGGTGATGCCATTTCCATTTTTGGGTCCAGCCACGTTTGGATCGATCACAATTCACTTTCTAGTTGTACTGATGGTCTTGTTGATGCCATTATGGGTTCCACTGCCATTACAATCTCCAATAATCACTTCAGCAACCACAATGAGGTGATGCTTTTGGGACACAGTGATACGTACACGAGAGACAAGCAGATGCAAGTGACCATTGCTTACAACCATTTCGGAGAGGGACTTATCCAAAGAATGCCGAGGTGCCGACACGGGTACTTTCATGTGGTGAACAACGACTACACTCATTGGGAGATGTATGCGATAGGTGGGAGTGCAGACCCAACCATCAACAGTCAGGGCAATAGATATGCAGCTCCAACCAACCCATTTGCCAAGGAGGTAGTGACGAAGAGGGTTGAAACAGAGGAAAGCGAGTGGAAGGGGTGGAATTGGAGATCAGAGGGAGATATGTTGCTGAATGGAGCCTACTTTACCGCATCTGGTTTTGGAGCTTCATCCAGCTACGCCAGGGCCTCAAGCTTAGGAGCCAAACCTTCTTCTATGGTGGGCTTCATAACATCTGCTGCTGGGGCTCTTTCTTGCGTCAAAGGCAACCCCTGC 1287 48.72 LELSNSNFPIPKSSSQLTTFSNLSVLTCFVTSDRGEEGEDLKSNEHAVEDPEEIASMVDLSIRNSSERRNLGFFSCGTGNPIDDCWRCDPNWHLNRKRLADCSIGFGRNAIGGRDGSFYVVTDPGDDDPVNPKIGTLRHAVIQDSPLWIIFKRDMVIRLKQELIVNSFKTIDGRGADVHIANGACITIQFVTNVIVHGLSIHDCKPTGNAMVRSSETHVGWRTMADGDAISIFGSSHVWIDHNSLSSCTDGLVDAIMGSTAITISNNHFSNHNEVMLLGHSDTYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPTNPFAKEVVTKRVETEESEWKGWNWRSEGDMLLNGAYFTASGFGASSSYARASSLGAKPSSMVGFITSAAGALSCVKGNPC 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 467230 469267 + Bda032829 Bda13g00026 18157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00026 429 SUPERFAMILY Pectin lyase-like 57 423 IPR011050 -
Bda13g00026 429 SMART amb_all 154 351 IPR002022 -
Bda13g00026 429 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Bda13g00026 429 PRINTS Pollen allergen Amb family signature 226 247 IPR018082 -
Bda13g00026 429 PRINTS Pollen allergen Amb family signature 400 423 IPR018082 -
Bda13g00026 429 PRINTS Pollen allergen Amb family signature 371 395 IPR018082 -
Bda13g00026 429 PRINTS Pollen allergen Amb family signature 162 178 IPR018082 -
Bda13g00026 429 PRINTS Pollen allergen Amb family signature 102 119 IPR018082 -
Bda13g00026 429 PRINTS Pollen allergen Amb family signature 126 151 IPR018082 -
Bda13g00026 429 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Bda13g00026 429 PANTHER PECTATE LYASE 18-RELATED 36 425 IPR045032 GO:0030570
Bda13g00026 429 Gene3D - 79 422 IPR012334 -
Bda13g00026 429 PANTHER PECTATE LYASE 36 425 - -
Bda13g00026 429 Pfam Pectate lyase 160 343 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00688 Bda-Chr12:33372667 Bda13g00026 Bda-Chr13:467230 0 dispersed
Bda13g00026 Bda-Chr13:467230 Bda14g00785 Bda-Chr14:6062290 0 dispersed
Bda13g00026 Bda-Chr13:467230 Bda05g00882 Bda-Chr5:57283467 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00026 K01728 - jre:108995893 710.679