Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00032 ATGGGATCTCTTTTCCCCTTTCAAGACCTCAATCTCCTCCCCGACCCCTTCGTCTCCGCTGCTGGTGCTCCCTCTCTCGCCTCCACTTCTCAATCCGAAACCATACCCACTCCCATTGACCCATTTATCCACCCTGCTCCCACACCCACCACAATTAACTGCAGTTTCAGCTTCAAAACTCCCAAAATCGAACCCAAGCTTGAGCCATATGACCAAATGCCCCGGACTCTAGAACCGGCGATGTCTCGGGATCCACTGGAGGACTTCTTTTCCAGCACTGCTTATGCAAACTACTCTAGTTCCGATCTGACCCGTTCATCCTCTTTCTCTGAACCGAAGGACATCTCCATTTCTCTTCCTTCAGACACACCTTCCAGTCACGAAAATGTATACTCCGAGTTCTATCGAATATCTGAACTTTTCAGGTCCGCGTTCGCCAAGGGATTGCAGAAATACGGAAACCTCGAGGTTTTGGACCCCGATTCTAGAGCAATTGTCCCGGTTCCGCAGGAGAATCAAGTCTCGTCCCTGGCTGTCTCAAAGAGGCATTTTCACCAAAGGTCCGCTGAGCTTGTGAGGGTCACAGATCTCGGCGCAGAGGATCAGAGGTACTTTCGCGATGTAGTGAGACGGACGAGGATGCTTTTTGATTCATTGCGCATTTTATCTATGACGGAGGATGACAAATGCAAGGAACCGGGGTTCAGGCGGGCGCGAGGTGATTTGAGAGCCTCTTCCATTATGAGGAATCGCGGTCTGTGGCTGAATCGCGATAAACGAATTGTGGGTTCAATTCCCGGTGTCTACATTGGAGATTTGTTCCTGTTCAGGATGGAGTTATGCGTAGTTGGTTTGCATGGTCAGGCTCAAGCTGGAATCGACTACGTCCCAGCAAGTCATAGCTCTAATGGTGAGCCGATTGCCACAAGCATAATAGTTTCTGGTGGATACGAGGACGATGAGGACGCCGGGGACATGATAATTTACACTGGTCACGGAGGGCAAGACAAGTGTTCAAGGCAATGCACGAACCAGAAGCTAGAGGGTGGAAATCTGGCGCTGGAAAGAAGTATGTATTATGGGATTGAAGTGAGAGTTATTCGAGGGATCAAGTGCGAGGGCAGTATAACAACTAAGGTTTATGTTTATGACGGTTTATATAAAATTGTAGATTGTTGGTTTGATGTGGGAAAGTCTGGATTTGGTGTTTTCAAGTATAAGCTTCTGCGTATTGATGGGCAAACTGAGATGGGTAGCTCCATTTTGAGGTTTGCCGAAACTCTTAGAAATAAACCTTTGTCCTTAAGACCCTCTGGCTATTTCAGCCTGGATATTTCCATGAAAAAAGAGAACGTCCCGATTCTCCTTTTCAATGACATTGACAATGATCAGCATCCATTATATTTTGAATATACAGTCAAGCCTGTGTTTCCACTATTTGCATTTCACCAATCCGGAAGTGCCACTGGATGTAGTTGTGTTTCAGGGTGTGCTAATGATTGCTTTTGCGCTCTCAAAAATGGTGGGGAGCTTGCTTACGATCAAAACGGGTTTCTGGTAAGAGGGAAGCCTGTAATTTTTGAATGTGGGCCAGATTGTCGGTGTCCCCCACAATGCCGAAATCGTGCAACTCAAAGAGGGTTGAAACACAGACTGGAAGTTTTTAGATCCAGGGAAACCGGTTGGGGCATCAGATCATTGGATGTGATACATGCTGGGGCTTTTATATGTGAATATACTGGTGTTTTTCTCACCAGGGATCAAGCCCAAATTGTTTCCATGAATGGCGATACTTTAATTTATCCGAGTCGTTTTTCAGATCGTTGGGCAGAATGGGGCGATATATCTCAAATTGATTCCAATTACGTTCGACCCTCGTACCCGTCAGTTCCTCCATTGGATTTTGCAGTGGATGTGTCAAAAATGAGAAATGTTGCCTGTTATTTGAGCCACAGCACAACTCCAAATGTTATGTCACAGTTTGTGTTATATGATCATAACAATTTAATGTTCCCACATATTATGGTATTTGCAATGGAAAACATCCCGCCGATGAGAGAGCTCAGCCTGGACTATGGTGTCGCTGATGAATGCGCCGGAAAACTTGCTATCTGCAACTGA 2121 46.11 MGSLFPFQDLNLLPDPFVSAAGAPSLASTSQSETIPTPIDPFIHPAPTPTTINCSFSFKTPKIEPKLEPYDQMPRTLEPAMSRDPLEDFFSSTAYANYSSSDLTRSSSFSEPKDISISLPSDTPSSHENVYSEFYRISELFRSAFAKGLQKYGNLEVLDPDSRAIVPVPQENQVSSLAVSKRHFHQRSAELVRVTDLGAEDQRYFRDVVRRTRMLFDSLRILSMTEDDKCKEPGFRRARGDLRASSIMRNRGLWLNRDKRIVGSIPGVYIGDLFLFRMELCVVGLHGQAQAGIDYVPASHSSNGEPIATSIIVSGGYEDDEDAGDMIIYTGHGGQDKCSRQCTNQKLEGGNLALERSMYYGIEVRVIRGIKCEGSITTKVYVYDGLYKIVDCWFDVGKSGFGVFKYKLLRIDGQTEMGSSILRFAETLRNKPLSLRPSGYFSLDISMKKENVPILLFNDIDNDQHPLYFEYTVKPVFPLFAFHQSGSATGCSCVSGCANDCFCALKNGGELAYDQNGFLVRGKPVIFECGPDCRCPPQCRNRATQRGLKHRLEVFRSRETGWGIRSLDVIHAGAFICEYTGVFLTRDQAQIVSMNGDTLIYPSRFSDRWAEWGDISQIDSNYVRPSYPSVPPLDFAVDVSKMRNVACYLSHSTTPNVMSQFVLYDHNNLMFPHIMVFAMENIPPMRELSLDYGVADECAGKLAICN 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 524843 526963 + Bda000874.2 Bda13g00032 18163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00032 706 SMART G9a_1 258 414 IPR003105 -
Bda13g00032 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 100 704 - -
Bda13g00032 706 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 81 706 IPR025794 GO:0016571
Bda13g00032 706 SUPERFAMILY PUA domain-like 244 424 IPR015947 -
Bda13g00032 706 MobiDBLite consensus disorder prediction 23 44 - -
Bda13g00032 706 SMART preset_2 442 534 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda13g00032 706 Pfam SET domain 561 693 IPR001214 GO:0005515
Bda13g00032 706 Gene3D - 260 418 IPR036987 -
Bda13g00032 706 ProSiteProfiles SET domain profile. 550 693 IPR001214 GO:0005515
Bda13g00032 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH9-LIKE 100 704 - -
Bda13g00032 706 SUPERFAMILY SET domain 434 694 IPR046341 -
Bda13g00032 706 MobiDBLite consensus disorder prediction 23 37 - -
Bda13g00032 706 Gene3D SET domain 419 706 IPR046341 -
Bda13g00032 706 ProSiteProfiles Pre-SET domain profile. 489 547 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda13g00032 706 SMART set_7 550 699 IPR001214 GO:0005515
Bda13g00032 706 Pfam Pre-SET motif 445 542 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda13g00032 706 Pfam SAD/SRA domain 262 414 IPR003105 -
Bda13g00032 706 ProSiteProfiles YDG domain profile. 263 410 IPR003105 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00032 K11420 EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT [EC:2.1.1.355] - csv:101222210 1056.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00705 Bda-Chr6:9727526 Bda13g00032 Bda-Chr13:524843 5.92E-11 dispersed
Bda08g00603 Bda-Chr8:6157525 Bda13g00032 Bda-Chr13:524843 3.56E-30 dispersed
Bda13g00032 Bda-Chr13:524843 Bda04g00312 Bda-Chr4:46775280 4.63E-12 dispersed
Bda15g00700 Bda-Chr15:10433153 Bda13g00032 Bda-Chr13:524843 2.54E-10 dispersed
Bda13g00032 Bda-Chr13:524843 Bda13g01887 Bda-Chr13:43246664 1.28E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g800 . . . . . Bpe14g01288 . . . . Cma06g01287 Cma14g01850 Car06g01105 Car14g01658 . . Cpe03g01550 . . . . . . . . . . . . . . Cone14ag0189 . Cone7ag0355 Cone4ag0368 Lsi05g01779 . . Cme06g00442 Blo02g00682 . . Bda13g00032 . . Bma02g00745 . . Cmo06g01292 Cmo14g01895 . . . . . . . . . . . . . Cla05g00401 Cam05g0437 Cec05g0443 Cco05g0442 Clacu05g0432 Cmu05g0413 Cre05g0474 . Csa03g01158 Chy06g00421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007214 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16833 PF02182 SAD_SRA 1.30E-48 CL0178 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00032 Bda_Chr13 FPKM 20.457712 26.102345 16.872961 17.130598 16.792479 17.952 14.966486 5.41531 4.856791