Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00033 ATGTATTGGTTGTCCACCAGAAGCGCTGTTGTTGCTTTCCCGCGATGGCGTTCTCTGTCTTTTCTGCTTCGCTTCCCTGCTTTCACTTACAGCTTCTTCACTCCTTCCCCATTGCTTGTGGAGGATCTAAAACATATTCATTGCCTGAATGAAAGAAAATATTCAAGAGGGAGAGGGTGCACAAAAGCTGTGAGGAAACTGAAGGCATTTAGCAATGCCCTAGATGATAAGGATCTCTCGCACATTTTATGGTGGAAGGAGAAAATACAAATGTGCAGAAAAACTTCAACTGTTCAGCTGATTAAGAGGCTGGTATATTCTAATTTGTTAGGCGTCGATACTAATTTGAAGAATGGAAGTCTTAAAGAGGGAAATCTTAATTGGGAGATGCTACAATTCAAATCACGGTTTCCTCGAGAAGTTTTACTATGCAGAGTTGGAGATTTTTATGAAGCCATCGGACTGGATGCTTGTATCCTTGTTGAATATGCTGGTTTGAATCCTTTCGGGGGTCAACGGTCAGATAGCATTCCAAGAGCTGGATGCCTTTTACAGAATCTTCGACAGACCTTGGATGATCTGACTCGTAATGGGTGGTCAGTGTGCATTGTGGAAGAAGTTCAAGGTCCAACACAGGCTCGTTCTCGCAAAGGTCGTTTTATATCAGGGCATGCACATCCTGGTAGTCCTTATGTCTTTGGACTTGTTGGGGTTAATCACGAACTTGAGTTTCCAGAGCCAATGCCAGTTGTTGGAATCTCTAGATCTGCAAAGGGCTATTGCATTAACTTTGTTCTAGAGACTATGAAGACATATTCATCAGAGGATGGCTTGACTGAAGAGGCATTGGTTACAAAATTACGGACTTGTCAGTACCATTATTTATTTATGCATACATCACTAAGGCATAATTCCTCAGGTACTTGTCGATGGGGAGAATTTGGTGAGGGGGGCCTATTGTGGGGAGAATGCAATGCCAGACATTTCGAATGGTTTGATGGCAATCCCTTGACTGAACTTTTGTTAAAGGTTAAAGAGCTGTATGGGCTTGGGGATGAAGTTCCATTTCGAAATGTTACTATACCTTCAGAAAATAAACCGCGATCTTTAACCTTAGGAACAGCTACACAGATTGGTGCCATACCAACAGAGGGAATACCTTGTTTATTGAAGGTGTTTCTTCCATCAAATTGTGCTGGGCTACCTGCATTGTATATTAGAGATCTGCTTCTCAATCCTCCAGCTTATGAAACTGCATTGACGATTCAAGAAACTTGCAAACTTATGAGCAGTGTTACATGTTCAATCCCAGAGTTCACTTGTGTTTCGCCTCCTAAGCTAGTAAAACTATTGGAACTAAAGGAGGCCAATCATATAGAGTTTTGTAGAATGAAAAATGTACTGGATGAAATACTACACATGTATAACAATTCTGAGCTAGAGAAAATCTTGAAACTTCTGATGAATCCTACAGAGATGGCAACTGGCCTAAAAATTGACTTCAACGCCTTTGTTGATGAATGTGAATGCACATCTAGTAGAATTTCTGAAATGATCTTTCTAGATGGCGAACATGACCAGAAAATCAGTTCTTTCCCTCTTATTCCTGGTGACTTTTTTGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAGCGGGCTCATGTAGAGGAAGCCTTTGATGAAGTAGAGAATGCAGCTGAGACTTTATCTCTGGCAGTTCGTGAAGATTTCCTCCCAATAATTTCAAGATTAAAGGCTATTACAGCGCCACTTGGTGGTCCAAAGGGAGAGATATTATATTCTCGAGAGCATGAAGCTGTTTGGTTTAAGGGAAAACGATTTGCACCAGCTGTTTGGGCTGGCACTCATGGAGAAGAACAGATTAAGCAACTTAAACCTGCACTGGATTCCAAAGGCAAAAAGGTTGGAGAAGAATGGTTTACCACAGTGAAGGTGGAGGATGCCTTAACAAGGTACCACGAAGCAAGTGCCAAGGCAAAAGTATCGGTTGTATGTTTGTTGAGGCAACTTTCTTCGGAATTACAAGCTAAAATCAATATCCTTGTGTTTGCTTCCACGTTGCTTGTTATTGCAAAGGCTTTATTTGCTCACGTGAGTGAAGGGATGAGGAGGAGATGGGTTTTTCCTACTCTCGCAGAACCTTCCAGTACTAAGGGAAACTTATTGAACAAAGATCGTGGATTGAGGCTAGTTGGTCTATCACCATATTGGTTTGATGTTGCAGAAGGCCATGCTGTTTATAATACGGTTGATATGCAATCATTGTTTCTTTTGACTGGACCAAATGGTGGTGGTAAATCTAGTTTACTTCGATCAATATGTGCTGCTGCATTACTTGGGATGTGTGGATTTATGGTACCTGCAGAGTCCGCTGTCATTCCTCATTTTGATTCCATTGTCCTTCATATGAAATCTTATGATAGCCCCGCTGATGGGAAAAGTTCATTTCAGGTAGAAATGTCAGAGATGCGGTCCATTGTTGTTGGAGCTACTGAAAGAAGTCTTGTGCTCATCGATGAAATTTGTCGTGGAACAGAAACAGCTAAAGGAACTTGCATTGCCGGTAGCATTATCGAAAGTCTTGATAAAATAGGTTGCCTCGGTATAGTATCCACACACTTGCATGGAATTTTTAGTTTGCCTCTAAATACCAGCAGGGTAATTTATAAAGCAATGGGAACAGTGTGTAATAATGGACTTACAAACCCAACTTGGAAGCTGATAGATGGAATCTGTAGAGAAAGCCTTGCATTTGAAACAGCAAAGAAGGAAGGTATTCCGGAGTCAATAATTCATCGGGCGGAAGACTTGTATTCGTCATTTTATTCTAAAGAAGTGATAGTTGGAAGAGATGAGATTAACTTACTACATCTTTCTTCAAGTGTTAATGGTTCTGATGATCATCAAGTACGTAGTGCAAAAGCAGAAGCCGACAGCCACCCAACAAAATTACCTGTTGAAATCTTGCACAAGGAAGTTGAGCGAGCAATCATTTCTACATGCTATAAGAAGCTTACAGAGCTAACAACGGAGAAAAATACATTAATATTACCAGAAATACGTTGTGTTCTGATTTTCCCTAGGGAAAAACCGCCTCCATCAACAGTAGGTGCTTCAAGCGTTTATGTGATGCTCAGGCCTGATAACAAACTTTATGTTGGACAGTCAGATGATCTTGAAGGTCGTGTACGCGCACATCGCTCAAAAGAGGGAATGGAGAATGCCTCTTTTCTTTATTTTATTGTTGGAGGAAAGAGTTTGGCTTGCCAATTTGAGACACTGCTCATCAACCAGCTTCCTAGTCTAGGCTTTCAAGTTACCAACACGGCGGATGGAAAACACAGAAATTTCGGCACATCAAATCTCTCTGTAGAAAGCATGTCTATT 3411 41.13 MYWLSTRSAVVAFPRWRSLSFLLRFPAFTYSFFTPSPLLVEDLKHIHCLNERKYSRGRGCTKAVRKLKAFSNALDDKDLSHILWWKEKIQMCRKTSTVQLIKRLVYSNLLGVDTNLKNGSLKEGNLNWEMLQFKSRFPREVLLCRVGDFYEAIGLDACILVEYAGLNPFGGQRSDSIPRAGCLLQNLRQTLDDLTRNGWSVCIVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLVGVNHELEFPEPMPVVGISRSAKGYCINFVLETMKTYSSEDGLTEEALVTKLRTCQYHYLFMHTSLRHNSSGTCRWGEFGEGGLLWGECNARHFEWFDGNPLTELLLKVKELYGLGDEVPFRNVTIPSENKPRSLTLGTATQIGAIPTEGIPCLLKVFLPSNCAGLPALYIRDLLLNPPAYETALTIQETCKLMSSVTCSIPEFTCVSPPKLVKLLELKEANHIEFCRMKNVLDEILHMYNNSELEKILKLLMNPTEMATGLKIDFNAFVDECECTSSRISEMIFLDGEHDQKISSFPLIPGDFFEDMESSWKGRVKRAHVEEAFDEVENAAETLSLAVREDFLPIISRLKAITAPLGGPKGEILYSREHEAVWFKGKRFAPAVWAGTHGEEQIKQLKPALDSKGKKVGEEWFTTVKVEDALTRYHEASAKAKVSVVCLLRQLSSELQAKINILVFASTLLVIAKALFAHVSEGMRRRWVFPTLAEPSSTKGNLLNKDRGLRLVGLSPYWFDVAEGHAVYNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGMCGFMVPAESAVIPHFDSIVLHMKSYDSPADGKSSFQVEMSEMRSIVVGATERSLVLIDEICRGTETAKGTCIAGSIIESLDKIGCLGIVSTHLHGIFSLPLNTSRVIYKAMGTVCNNGLTNPTWKLIDGICRESLAFETAKKEGIPESIIHRAEDLYSSFYSKEVIVGRDEINLLHLSSSVNGSDDHQVRSAKAEADSHPTKLPVEILHKEVERAIISTCYKKLTELTTEKNTLILPEIRCVLIFPREKPPPSTVGASSVYVMLRPDNKLYVGQSDDLEGRVRAHRSKEGMENASFLYFIVGGKSLACQFETLLINQLPSLGFQVTNTADGKHRNFGTSNLSVESMSI 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 534128 561948 - Bda032830 Bda13g00033 18164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00033 1137 Pfam MutS domain V 765 947 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bda13g00033 1137 Gene3D - 738 1029 IPR027417 -
Bda13g00033 1137 SUPERFAMILY DNA repair protein MutS, domain I 118 229 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bda13g00033 1137 ProSitePatterns DNA mismatch repair proteins mutS family signature. 842 858 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bda13g00033 1137 SUPERFAMILY GIY-YIG endonuclease 1047 1109 IPR035901 -
Bda13g00033 1137 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 168 1090 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bda13g00033 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 751 948 IPR027417 -
Bda13g00033 1137 CDD ABC_MutS_homologs 754 934 - -
Bda13g00033 1137 Gene3D DNA repair protein MutS, domain I 117 225 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bda13g00033 1137 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 168 1090 - -
Bda13g00033 1137 Pfam MutS domain I 131 221 IPR007695 GO:0005524|GO:0006298|GO:0030983
Bda13g00033 1137 SMART mutATP5 761 947 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00033 - - - qsu:111996530 1705.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01044 Bda-Chr8:21918776 Bda13g00033 Bda-Chr13:534128 4.06E-17 dispersed
Bda09g00104 Bda-Chr9:1928922 Bda13g00033 Bda-Chr13:534128 1.50E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g793 . . . . . Bpe14g01287 . . . . . . . Car14g01656 . . Cpe03g01548 . . . . . . . . . . . . . . Cone14ag0185 . . . . . . Cme06g00444 Blo02g00683 . . Bda13g00033 . . Bma02g00746 . . . Cmo14g01893 . . . . . . . . . . . . . . . . . . . . . Csa03g01161 Chy06g00424 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00033 Bda_Chr13 FPKM 12.879174 15.689828 9.280676 10.333191 8.852055 7.342935 8.249852 17.569685 17.110924