Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00041 ATGAACTGCTCAATTTCCGGTGAGGTCCCGGAAGAGCCGGTTGTCTCTACGAAATCCGGATTACTCTTCGAGAAGCGTTTAATCGAGAGGCACGTTTTGGACTATGGAAAATGCCCAATTACTGGGGAATCACTAGCCATGGATGATGTTGTTCCAATTAAAACTGGGAAGATAGTGAAGCCCAGACCCGTTCAAGCGGCTAGTATCCCTGGCATGTTAGGAATGTTCCAAAATGAATGGGATGGCTTAATGCTTTCTAATTTTGCGCTTGAGCAACAATTGCATACTGCCAGACAAGAGCTAAGCCATGCTTTATACCAGCATGATGCTGCCTGTCGTGTGATTGCGAGGCTTAAAAAAGAAAGGGATGAAGCTCGATCATTACTTGCACAAGCTGAAAGGCAAATGCCTTCTGTAACATCCACACTAATTGTTACTGCTTCTTCTGTTCATAGCAATGGGAAACGAGGTGCTGAAGATGAAGAATCTGGCCCTGATGGAAAGAGAATACGCCCTGGAATTACTACAAGTACTATCTCTGAGCTTACAGACTGTAATGCTGCACTCTCACAGCAGAGGAAGAAGCGGCAGATACCAGCAACTTTGGCTCCTGTCGAGCTTTTGGAGAGCTATACCCAGATATCTAGTCACCCACTCCATAAAACAAGCAAACCTGGCATTTTATCTCTTGATATTCATTATGGCAAGGACATAGTTGCCACGGGAGGGCTTGACACCAATGCAGTAATTTTTGATCGACCATCTGGACAGATTTTATCTACACTTAGCGGTCATTCTAAGAAGGTGACTAGCGTAAAGTTTGTGGCACGAGATGCATTATTCTTAAGTGGTTCGGCTGATAAGACTGTTCGTGTATGGCAAGGCTCTGATGATGGGAATTACAGTTGTAGGCATGTCTTGAAGGATCACACTGCCGAGGTGCAAGCAGTTACAGTTCATGCTACGAACAACTACTTTGTGACTGCCTCTCTTGATAACACATGGTGTTTCTATGAACTTTCTTCAGGATTATGTCTAGCACAGGTTGCAGACACTTCAGGAACGGAGGGCTACACATCGGCAGCCTTTCATCCTGATGGTCTTATCCTTGGAACAGGCACATCTGAGGCTCTTGTTAAGATTTGGGATGTAAAAAGTCAGACAAATGTTGCCAGATTTGATGGACACGTTGGGGCTGTTACTGCAATATCTTTCTCAGAGAACGGTTACTTCCTTGCAACTGCTGCTCATGATGGTGTAAAGCTGTGGGATCTACGCAAATTAAAGAACTTCCGCACATTTTCTCCATATGATTCAGATACACCAACAAACTCTGTTGAATTCGACCAAAGTGGAAGTTACCTAGCAATTGCAGGATCAGATTTAAGGGTTTACCAAGTTGCGAACGTGAAATCTGAATGGAAGTGCATTAAGACTATCCCAGATTTGTCGGGAACAGGTAAAGCAACGTGCATCAAATTCGGTGTAGATGGAAAATACTTAGCTGTAGGATCGATGGACCGAAACCTCCGGATATTTGGTTTGCCGGGAGAAGATGGTCCGATGGAGTCATAG 1575 44.38 MNCSISGEVPEEPVVSTKSGLLFEKRLIERHVLDYGKCPITGESLAMDDVVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPSVTSTLIVTASSVHSNGKRGAEDEESGPDGKRIRPGITTSTISELTDCNAALSQQRKKRQIPATLAPVELLESYTQISSHPLHKTSKPGILSLDIHYGKDIVATGGLDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVARDALFLSGSADKTVRVWQGSDDGNYSCRHVLKDHTAEVQAVTVHATNNYFVTASLDNTWCFYELSSGLCLAQVADTSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDSDTPTNSVEFDQSGSYLAIAGSDLRVYQVANVKSEWKCIKTIPDLSGTGKATCIKFGVDGKYLAVGSMDRNLRIFGLPGEDGPMES 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 611808 625434 - Bda000883.1 Bda13g00041 18172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00041 524 SMART WD40_4 210 252 IPR001680 GO:0005515
Bda13g00041 524 SMART WD40_4 427 466 IPR001680 GO:0005515
Bda13g00041 524 SMART WD40_4 255 294 IPR001680 GO:0005515
Bda13g00041 524 SMART WD40_4 342 383 IPR001680 GO:0005515
Bda13g00041 524 SMART WD40_4 473 514 IPR001680 GO:0005515
Bda13g00041 524 SMART WD40_4 300 339 IPR001680 GO:0005515
Bda13g00041 524 SMART WD40_4 386 424 IPR001680 GO:0005515
Bda13g00041 524 CDD WD40 226 513 - -
Bda13g00041 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Bda13g00041 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Bda13g00041 524 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Bda13g00041 524 SUPERFAMILY WD40 repeat-like 224 513 IPR036322 GO:0005515
Bda13g00041 524 Coils Coil 115 135 - -
Bda13g00041 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 426 - -
Bda13g00041 524 MobiDBLite consensus disorder prediction 147 173 - -
Bda13g00041 524 SUPERFAMILY RING/U-box 1 53 - -
Bda13g00041 524 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Bda13g00041 524 Gene3D - 202 515 IPR015943 GO:0005515
Bda13g00041 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 433 IPR001680 GO:0005515
Bda13g00041 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Bda13g00041 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 392 IPR001680 GO:0005515
Bda13g00041 524 Pfam WD domain, G-beta repeat 389 424 IPR001680 GO:0005515
Bda13g00041 524 Pfam WD domain, G-beta repeat 475 513 IPR001680 GO:0005515
Bda13g00041 524 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Bda13g00041 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Bda13g00041 524 MobiDBLite consensus disorder prediction 154 168 - -
Bda13g00041 524 CDD RING-Ubox_PRP19 3 54 - -
Bda13g00041 524 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Bda13g00041 524 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 524 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda11g00647 Bda13g00041 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00041 Bda-Chr13:611808 Bda15g00066 Bda-Chr15:2339049 9.34E-08 dispersed
Bda15g00401 Bda-Chr15:6913794 Bda13g00041 Bda-Chr13:611808 5.02E-10 dispersed
Bda11g00647 Bda-Chr11:6426976 Bda13g00041 Bda-Chr13:611808 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00041 K10599 - vvi:100249408 919.457