Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00048 ATGTTTAGAAGCAAAGTTGGGAAGATGATTAAGTGCATCTGTCCAGGAAATCAACTAGAAGTTGATGAAATGGATCATTCATCTGCGTCTCTGCCAACGAGAGACTATTCTGCCAGCATTTTTTCGTCTCGAACTGTAGAGATGGAAACAAGGGCGGAGACTAGCAACATCGAAGAAGCCGAGTCGACTCTTCGTGAGAGTGATTATCTCAACTATGAGGAAGCAAGGGCTTTACTTGGAAGGCTTGAGTATCAAAAAGGAAACATAGAAGCTGCTCTCCAAGTGTTTGAAGGAATAGATATCACTGCAGTGACTCCTAGGATCAGAGTTGCTATTTCTAGAAGATGTGAACAAAATAATAGATGGTATTCACAAAGTGATGCTGCTCTGCTTATGTCCATGCATGCTGTTAGTTTATTACTCGAAGCTGTCTTTCTTAAATCTAAATCATTGCAAAGTCTAGGTCGATTCACAGAGGCAGCTAAATCTTGCTTAGTTGTTTTGGATACCGTTCAATCTGCATTACCGGAAGGCTTGCCTGAAAACTTTGCTGTAGATTGTAAATTACAAGAGATTTTATCGAAGGCTGTCGAGTTGCTTCCCAACTTATGGCAATCAGCGGGCTCTCTCCAAGAATGTATCTTGTCATACAGACGGGCTCTCCTCTATCGATGGAATCTCGATATTAAAACCAGTTCGAGGATAGAAAAAGAATTTGCAATCTTTCTTCTTTACAGTGGTTTCGATACGAACCCTCCTAATCTTTGTTCACAGATGGAAAGCTCTTTTGTGCCCAAAAACAACATAGAAGAGGCAGTTCTTTTGTTATTAATTCTCATGAGAAAATATTTTCTTGGAAGAATTGGGTGGGACCCCTCCATCCTTGAGCATCTTACATTTGCTCTCTCTATTTCAGGAGAATTACTATCTTTGGCACATCAAGTTGAGCAGTTGCTTCCAGGAATTATAGCAAGAAAAGAAAAATATTGCATAGTAGCTCTCTGTTTCTATGGCGAAGGTGAATGTATTGTTGCTTTGAATCTCTTAAAAAATTTTCTGAACTGCAGAGAAATTCCTGACTGTACGCTTGAGTTATTGTTGGCTTCAAAAATATGTGCCGAGAATTCACTCTGTATTGACGAAGGGATCAGATTTACTCGACAAGCAATTTCGATGATGCATGGAAAATGCTCTCAAATGGTATCTGTGGCGACTTGCTTACTTGGAGTCTTACTATCAGCTGAATCGAGATCAGTTGTTTCGGATTCTGAGAGGAATTCGAAGCGAGCAGAAGCACTTGAGGCCTTACAAACCGCCGAAAAGACAATGAGTGAAAAAGACCCTTACATTGTGTTTCATCTTTGTCTTGAACTTGCTGATCAGAGGAAATTGGATTTGGCTCTATATTTTGCCAAGCAATTGCTTAAACTTGAGGCTGGGACGAGTATTAGAGGGTATAGTCTTTTGGCACGAATATTGTCTGCTCAAAAACGATTTGCAGATGCTGAGACTGTATTGAATGCCTCACTTGATCAGACCGAGAAGTGGGATCAAGTGGAATTGTTAAGAACGAAAGCTAAACTCCAGATTGCGCAGGGCCAGGCGAAGAAGTTTATCGAGACATGTACTCATCTTTTAGCCGCTCTTCAAGTTCAGAACAAAAATATTGATTTTATAAACAAGCTCACCAAGAAAAAGAGCAGCCATGATAGAAGACTGGAAATGGAAGTATGGCATGATTTAGCCAATATATACACAAGCTTATCTCAATGGCGGAATGCCGAAGTCTGTCTTTCAAAGTCTGAAGCCATCAATCCTTACTCTGCTTCAAGATGGCACTCCATGGGTTTGTTATACGCGGCTAAAGGCCTTGATCAAGAGGCTCTGATAGCATACAAAAAAGCCTTGGATGTGGAAGCCACCCATGTCCCGAGCTTGATCTCTGCTGCCTGCGTGCTCAGACGGCATGGAAGTCAATGCTTGGCTGTGGTGAGAAGCTTACTGGGATATGCCCTCCGACTCGACCCATCAAATCCCACTGCTTGGTATAATCTTGGGCTTGCATACAAGTGTAGTGAGGGAGCATCTGCCATGGAGGTTGCCGAGTGCTTCCAGGCTGCAGCTCTTCTCGAAGAATCTGCACCAGTTGAACCCTTTAGATGA 2163 42.07 MFRSKVGKMIKCICPGNQLEVDEMDHSSASLPTRDYSASIFSSRTVEMETRAETSNIEEAESTLRESDYLNYEEARALLGRLEYQKGNIEAALQVFEGIDITAVTPRIRVAISRRCEQNNRWYSQSDAALLMSMHAVSLLLEAVFLKSKSLQSLGRFTEAAKSCLVVLDTVQSALPEGLPENFAVDCKLQEILSKAVELLPNLWQSAGSLQECILSYRRALLYRWNLDIKTSSRIEKEFAIFLLYSGFDTNPPNLCSQMESSFVPKNNIEEAVLLLLILMRKYFLGRIGWDPSILEHLTFALSISGELLSLAHQVEQLLPGIIARKEKYCIVALCFYGEGECIVALNLLKNFLNCREIPDCTLELLLASKICAENSLCIDEGIRFTRQAISMMHGKCSQMVSVATCLLGVLLSAESRSVVSDSERNSKRAEALEALQTAEKTMSEKDPYIVFHLCLELADQRKLDLALYFAKQLLKLEAGTSIRGYSLLARILSAQKRFADAETVLNASLDQTEKWDQVELLRTKAKLQIAQGQAKKFIETCTHLLAALQVQNKNIDFINKLTKKKSSHDRRLEMEVWHDLANIYTSLSQWRNAEVCLSKSEAINPYSASRWHSMGLLYAAKGLDQEALIAYKKALDVEATHVPSLISAACVLRRHGSQCLAVVRSLLGYALRLDPSNPTAWYNLGLAYKCSEGASAMEVAECFQAAALLEESAPVEPFR 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 681565 684459 - Bda000890.1 Bda13g00048 18179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00048 720 PANTHER PROTEIN NPG1 4 720 IPR043376 -
Bda13g00048 720 PANTHER OS10G0471400 PROTEIN 4 720 - -
Bda13g00048 720 SMART tpr_5 575 608 IPR019734 GO:0005515
Bda13g00048 720 SMART tpr_5 483 516 IPR019734 GO:0005515
Bda13g00048 720 SMART tpr_5 609 642 IPR019734 GO:0005515
Bda13g00048 720 ProSiteProfiles TPR repeat profile. 609 642 IPR019734 GO:0005515
Bda13g00048 720 Pfam Tetratricopeptide repeat 610 640 IPR019734 GO:0005515
Bda13g00048 720 SUPERFAMILY TPR-like 574 692 IPR011990 GO:0005515
Bda13g00048 720 SUPERFAMILY TPR-like 427 535 IPR011990 GO:0005515
Bda13g00048 720 Gene3D Tetratricopeptide repeat domain 560 715 IPR011990 GO:0005515
Bda13g00048 720 Gene3D Tetratricopeptide repeat domain 128 559 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00595 Bda-Chr9:8496964 Bda13g00048 Bda-Chr13:681565 0 dispersed
Bda09g00603 Bda-Chr9:8754309 Bda13g00048 Bda-Chr13:681565 0 dispersed
Bda13g00048 Bda-Chr13:681565 Bda01g01074 Bda-Chr1:45301723 9.64E-07 dispersed
Bda01g00593 Bda-Chr1:32937129 Bda13g00048 Bda-Chr13:681565 0 transposed
Bda13g00048 Bda-Chr13:681565 Bda05g00866 Bda-Chr5:57134533 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00048 K21843 - qsu:112015183 1023.08