Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00053 ATGGATGAGTTTATCTACAAGTTACAACAAGATAACAAGCTTATAGAGAAAGAGAGAAACGCAGCTCAGAAAGAGCTCTTAAGGAAAGAAAAGGAAATTGCAGAACTGAAGGTTAAACTTGACAGAATGGAAGGGAAGACTGGATCTGGGAAAAGCGAAGAAGAGATCATTTCAAAGGTGAATGAGCAGACCCAGATTCTGAAACTTGAGTTGGAAAAGAAGATGGAGAGATGCCAGCGAATTGCAAATGATTTTGTTGATTTGGAGAGGAGAAGAATGGAGGAATGGATACTTCAACAGCAGAATGGCGTTGAAATGCTTAGACGGCGACTAGAAGAAGTTGAGTATGAACTTTGCCGTACTAGGGATATAAATGGCGATGGACTTCGATCAAGTGTTGATGGAAATAGGCTGGCTAGAAGGTTGATGGGAATCTATGCCAGTGGAGATGGAGGGATGGTTAAATCGATGGAATTGGACATGGATGATCAAGAACCATCTTGTAGGGAGATTAAACTTGTGGGTGGAGGATTTTATCAGCCCAGCGATAACGGCATCAATGGCTTCTTGAACAAACTTAACGAGGCAGAGAATGACTCTCTCACGCCAAACTTTGAAGATAGAGTTCGTCTTAGTACTGTATTTGAAGAAGAAGAAGAGGAAGAGAAAGAAGTTATAGAGGAAAAGAAGGTATGTACTGTCGAAGACTCCTCGAAAATAACTCAAAATCTAGACGAAGATGATCGTTCAGAGGAAAATTCCGTAAGCTTCCGTGGGATTTATGAGCAATCCTCGAAGTTCCAAAGAGGTTAA 813 41.08 MDEFIYKLQQDNKLIEKERNAAQKELLRKEKEIAELKVKLDRMEGKTGSGKSEEEIISKVNEQTQILKLELEKKMERCQRIANDFVDLERRRMEEWILQQQNGVEMLRRRLEEVEYELCRTRDINGDGLRSSVDGNRLARRLMGIYASGDGGMVKSMELDMDDQEPSCREIKLVGGGFYQPSDNGINGFLNKLNEAENDSLTPNFEDRVRLSTVFEEEEEEEKEVIEEKKVCTVEDSSKITQNLDEDDRSEENSVSFRGIYEQSSKFQRG 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 763157 763969 + Bda000898.1 Bda13g00053 18184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00053 270 Coils Coil 5 46 - -
Bda13g00053 270 PANTHER KINESIN-LIKE PROTEIN KIF22 1 254 - -
Bda13g00053 270 MobiDBLite consensus disorder prediction 236 270 - -
Bda13g00053 270 Coils Coil 57 91 - -
Bda13g00053 270 MobiDBLite consensus disorder prediction 236 255 - -
Bda13g00053 270 MobiDBLite consensus disorder prediction 256 270 - -
Bda13g00053 270 Coils Coil 97 117 - -
Bda13g00053 270 PANTHER KINESIN-RELATED 1 254 IPR027640 GO:0003777|GO:0007018
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00053 - - K10398 csv:101206310 246.514
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g735 . . . . . Bpe14g01265 . . Cmo08g01050 Cmo17g00152 . . . . . . . . . . . . . . . . . . . . . Cone14ag0161 Cone15ag0172 . Cone4ag0340 . Csa02g01048 . . Blo02g00696 . . Bda13g00053 . . . . Sed09g0662 . . Cma08g01075 Cma17g00153 Car08g00947 Car17g00135 Cpe12g00130 Cpe17g00203 Bhi12g01600 Tan06g2394 Cmetu05g0124 . . . Lcy13g0389 . . . . . . . . . . Cme05g00583
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006035 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00053 Bda_Chr13 FPKM 13.12766 14.077717 7.169883 7.683702 4.602064 5.028482 6.130929 10.125881 11.513401