Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00060 ATGGCAATGGCCTCTTTTGCTTCATTTTCTACGGTTTCTGAGTTTTTTTCTGCTAATTCTTTGCGGGTCCATCTTCGTTCTTTCCCTCGCCACTCTACCCCTCCAAATGCCAGAAACCTTCGGAAGATTGCCGTTAGTGCCAAACAAGCTCATAGCAGTCCATTGCAGTGCCGGAAGCTCGGTGATTCTGACCTTCTAATTAGCGAAATTACTCTCGGAACGATGACCTTTGGACAGCAAAATACGGAAAAAGAAGCTCACGAGTTACTCAGTTATGCTTTCGAAAATGGCATCAATATTCTGGATACTGCAGAGGCAGTAATTGAGTATCAAAACAATTCACCTTTCTTTTTGCAGTATCCAATTCCCATGAAAGAGGAGACTATGGGAAAAACTGACCTTTACATTGGTAGTTGGCTCAAGTCCCAACCCCGTGATAAGGTTATTTTGGCGACAAAAGTTTGTGGTTATTCAGAGCGTTCAACTTATTTGCGCGACAATGCCACTGTTTTGCGGGTTGATCGTGCAAATATTAGAGAAAGTGTAGAGAAAAGCCTCAAGCGGCTAAACACTGATTACATTGACTTACTGCAAATACATTGGCCAGATCGCTATGTGCCTCTGTTTGGTGAATTTTACTATGATCCTGCTAAATGGAGGCCAAGTGTGTCATTTGTTGACCAACTGAAGGCATTTCAGGAACTCATCGATGAAGGAAAGGTACGCTATATTGGCGTTTCGAATGAAACTTCCTATGGAGTTATGGAGTTTGTTCATGCAGCAAAGGTTGAAGGACTACCAAAGATCGTTAGTATCCAAAACAGTTACAGCCTTCTGGTTAGATGTCGTTATGAAGTTGATCTTGTTGAAGTTTGCCATCCAAATAATTGCAATATTGGCTTACTTGCGTACTCCCCACTTGGCGGTGGATCACTGAGCGGAAAATACTTGGATCCAACTTCGGAAGCCGCAAGAAAAGGAAGGCTCAATCTCTTTCCAGCCTACATGGATAGATACAACAAATCTATTGCTAGGGAAGCAACAATAGAATATCAACAGTTGGCCAAAAAACACGGCCTAACTTTAGTTCAGCTTGCGCTCGGATTTGCCAGAGACCGACCATTTATGACCAGTGCAATTATAGGTGCCACATCCATTGATCAGTTGAAAGAAGACATCGAAGCTTACGTGGAAACTGAGCGTCCTTTGCCGGGTGAAGTGGTGGATGATATTCAGAGTCTTTTTAAGAGGTACAAAGATCCTGCTATCCTCTAG 1275 42.9 MAMASFASFSTVSEFFSANSLRVHLRSFPRHSTPPNARNLRKIAVSAKQAHSSPLQCRKLGDSDLLISEITLGTMTFGQQNTEKEAHELLSYAFENGINILDTAEAVIEYQNNSPFFLQYPIPMKEETMGKTDLYIGSWLKSQPRDKVILATKVCGYSERSTYLRDNATVLRVDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGEFYYDPAKWRPSVSFVDQLKAFQELIDEGKVRYIGVSNETSYGVMEFVHAAKVEGLPKIVSIQNSYSLLVRCRYEVDLVEVCHPNNCNIGLLAYSPLGGGSLSGKYLDPTSEAARKGRLNLFPAYMDRYNKSIAREATIEYQQLAKKHGLTLVQLALGFARDRPFMTSAIIGATSIDQLKEDIEAYVETERPLPGEVVDDIQSLFKRYKDPAIL 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 865012 870577 - Bda000907.1 Bda13g00060 18191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00060 424 CDD AKR_Tas-like 67 411 - -
Bda13g00060 424 Pfam Aldo/keto reductase family 69 414 IPR023210 -
Bda13g00060 424 PANTHER NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED 51 424 - -
Bda13g00060 424 Gene3D - 55 423 IPR036812 -
Bda13g00060 424 PANTHER - 51 424 - -
Bda13g00060 424 SUPERFAMILY NAD(P)-linked oxidoreductase 55 419 IPR036812 -
Bda13g00060 424 PRINTS Aldo-keto reductase signature 232 249 IPR020471 GO:0016491
Bda13g00060 424 PRINTS Aldo-keto reductase signature 184 202 IPR020471 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00060 - - - vri:117913831 638.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01030 Bda-Chr4:61220306 Bda13g00060 Bda-Chr13:865012 4.21E-75 dispersed
Bda13g00060 Bda-Chr13:865012 Bda13g00832 Bda-Chr13:9848342 1.46E-33 dispersed
Bda13g00060 Bda-Chr13:865012 Bda05g00319 Bda-Chr5:46224170 1.82E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g715 . . . . . Bpe14g01257 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0324 . . . . . . . . Bda13g00060 . . Bma02g00780 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011274 1 1 0 1 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 0 1 2 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00060 Bda_Chr13 FPKM 1.378057 1.369391 2.387839 2.074784 2.62731 2.013038 2.838723 2.403626 2.567265