Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00064 ATGATGGGCAGTATTAATAAGACCATAGTTTGGTTTAGGAGAGATCTTAGAATTGAGGACAATCCTGCTTTAGCTACCGCTGCAAGGAACGGTCGTGTTCTTCCCGTCTATATATGGTGTCCTAAAGAAGAAGGGCAATTCTACCCAGGTCGAGTCTCGAGATGGTGGCTTAAACAGTCTCTGGCTCACCTCCAAAAGTCTTTGAAGTCTCTTGGTGCCGAACTGGTTCTAATGAAAACAGAGAATACATATTCTGCTTTGTTAGTTTGTATCAATGCCACTGGCGCAAAGAGAATCGTCTTTAATCGCCTTTACGATCCTATTTCGGTTGTTCGAGACCACAGCTTGAAACAAAAACTAGCGGAACTTGGCGTGTCTGTGGAGACTTCTAATGCAGATCTGTTGTATGAACCATGGGAAGTTTACGATGAAAACGGCCTCGCCTATACAACCTTTGACGCATATTGGGACAAGTGCTTGCAGATGCAGAATGAACCTGCTTCTAGTCTTCCTCCATGGAAATTGGTACCAGCTGAAGGAGAGGTTAAAAAATGCCGGGTTGAGGAATTGGGTCTTGAAGACGACTCAGAAAAATCAAGCAACGACTTATTAAGCAGAGCTTGGTCTCCAGGTTGGAGCAATGCCGATAATGTTCTGACAGAATTTGTGGAACATCATTTACACACTTACTCAGAGAATAGGCTTGAAGTTGGGGTGAGCTCCACCTCACTTTTATCTCCATATCTTCATTTCGGAGAACTAAGTATTCGAAAAATATTTCACCTGGTGAGAATGAAGCAGATACTATGGATACGAGAAAGAAATACAGTAGCTCAGGAGAGTGTGACTCTTTATCTCAGGGCCATCGGGCTTCGAGAATACGCTCGATATTTATGTTTTAACTTCCCTTTCACGAACGAGAGATCGTTAATGAGTAACTTAAATTTCCTTCCTTGGAATGCCAGCGAAACCAATTTCAAGGTCTGGAGACAAGGCCGAACGGGATACCCATTGGTCGATGCGGGGATGAGAGAGCTATGGGCAACTGGTTGGATACACAACAAAATAAGAGTCATTGTCTCTAGTTTTGCAGTGAAAGTCTTGCTTCTTCCATGGAAATGGGGTATGAAGTATTTTTGGGACACCCTTTTGGATGCTGATTTGGAAAGTGATATACTTGGTTGGCAGTATATTTCGGGTAGTTTACCAGATGGTCACAAGCTTGATCGACTGGACAGTCCACAGATTCAAGGTTCGAAATTTGATCCTGAAGGAGAATATGTGAGGCTCTGGTTACCTGAGCTAGCGCGATTGCCCACTGAGTGGATTCATCATCCATGGGAGGCACCATCTTCCGTGCTGACAGCTTCTGGGGTAGAGCTGGGTACAAATTATCCAAAACCTATAATTGATCTGGATTTGGCTAGACAGAATTTGACAGAAGCTAAATTCAAAATGTGGGAAATGGAAGCTACTTTGAAGGCTGCAAACTCAAATTCTATGAAAGAAACGGTTGTGGATAATGTGAACGAAATCGAAAATCAAAATATTCCAAAGGTGGTTATAAAGGAACAGATTTGTCCTAGTTCATCTATCGATCAGAGGGTGCCGAGCTCTGGGAACATTGGCATTACGAGGAAGCGAACGACTTATCTCAACCAAGAGAAAGAAACAAAACTCCCCGAGATTATCTGCAATAAGAAAGGTGTCAATGAGATATCGAAAATAGAAGAAGATGCGTGCTCTACAGCAGAATCTTCATCAGCTAAAAAACAAACTATCTCGAGGACTTCATTTGCTGTTCCTCAATACTATCCTACATCAAAAGACAGCGAGACTTCTCAATGGAAGGAACTGACTCAAGCACAGATCTCCGGCAAAAGACAGTAA 1890 42.75 MMGSINKTIVWFRRDLRIEDNPALATAARNGRVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLQKSLKSLGAELVLMKTENTYSALLVCINATGAKRIVFNRLYDPISVVRDHSLKQKLAELGVSVETSNADLLYEPWEVYDENGLAYTTFDAYWDKCLQMQNEPASSLPPWKLVPAEGEVKKCRVEELGLEDDSEKSSNDLLSRAWSPGWSNADNVLTEFVEHHLHTYSENRLEVGVSSTSLLSPYLHFGELSIRKIFHLVRMKQILWIRERNTVAQESVTLYLRAIGLREYARYLCFNFPFTNERSLMSNLNFLPWNASETNFKVWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKVLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLDRLDSPQIQGSKFDPEGEYVRLWLPELARLPTEWIHHPWEAPSSVLTASGVELGTNYPKPIIDLDLARQNLTEAKFKMWEMEATLKAANSNSMKETVVDNVNEIENQNIPKVVIKEQICPSSSIDQRVPSSGNIGITRKRTTYLNQEKETKLPEIICNKKGVNEISKIEEDACSTAESSSAKKQTISRTSFAVPQYYPTSKDSETSQWKELTQAQISGKRQ 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 883157 886302 + Bda000910.1 Bda13g00064 18195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00064 629 PANTHER CRYPTOCHROME 6 582 IPR002081 -
Bda13g00064 629 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 7 482 IPR014134 GO:0009785|GO:0009882
Bda13g00064 629 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 303 504 - -
Bda13g00064 629 Gene3D - 135 295 - -
Bda13g00064 629 ProSitePatterns DNA photolyases class 1 signature 1. 334 346 IPR018394 -
Bda13g00064 629 Gene3D HUPs 9 208 IPR014729 -
Bda13g00064 629 Pfam FAD binding domain of DNA photolyase 285 481 IPR005101 -
Bda13g00064 629 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 135 IPR006050 -
Bda13g00064 629 PRINTS DNA photolyase signature 334 350 IPR002081 -
Bda13g00064 629 PRINTS DNA photolyase signature 354 372 IPR002081 -
Bda13g00064 629 MobiDBLite consensus disorder prediction 584 629 - -
Bda13g00064 629 Pfam DNA photolyase 8 167 IPR006050 -
Bda13g00064 629 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 195 489 IPR036134 -
Bda13g00064 629 Coils Coil 628 629 - -
Bda13g00064 629 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 8 178 IPR036155 -
Bda13g00064 629 PANTHER CRYPTOCHROME 2B APOPROTEIN 6 582 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00064 K12119 CRY2; cryptochrome 2 - pop:18102473 908.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00630 Bda13g00064 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00490 Bda-Chr3:4196127 Bda13g00064 Bda-Chr13:883157 0 dispersed
Bda11g00766 Bda-Chr11:7723238 Bda13g00064 Bda-Chr13:883157 3.94E-64 dispersed
Bda12g00086 Bda-Chr12:667230 Bda13g00064 Bda-Chr13:883157 1.25E-08 dispersed
Bda10g00791 Bda-Chr10:42263454 Bda13g00064 Bda-Chr13:883157 1.75E-47 transposed
Bda11g00630 Bda-Chr11:6328341 Bda13g00064 Bda-Chr13:883157 1.69E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00064 Bda_Chr13 FPKM 7.150262 7.866286 6.232547 7.264 0.930262 0.0 0.846761 2.419255 2.12375