Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00069 ATGGATTCCGACTTCTCGCCGCAATCTTCGTTTGGGTCGCCAGATGTCTCTGCATGGGAATGGGATGGTTTTGGATTTGGTAATGGTACTCTGCCTTTCGATGAAAATGATTCTGAAGAAATGCTTCTCTATGGACTTCTATCTGAGGCCAGAGAAGAAGTGTCAGACAGAATTGAGGTAGAAGAGGTCGTTTCAGAATCCAACGGAAAACCCATAAAGGATAAGTGCTTCAGAGGAGTGAGAAAGCGGCCGTGGGGGAAATTTGCGGCGGAGATAAGAGATTCAACGAGAAATGGCGTGAGGGTCTGGTTGGGAACGTTCGATAGCGCTGAAGCAGCAGCGTTGGCTTACGATCAAGCCGCTTTTGCAATGAGGGGATCGGCGGCGATCCTCAATTTTCCAGTGGAACGAGTGAGGGAATCACTTGAAGCGATGAACTGTAGAGCCTCCGACGGCGGCGGCTCTCCGGTGATGGCTCTGAAAAGAAAGCATTCAATGAGAAGGAAATACGGAGGGAAGAAAAACAAAATGAGAGAGGTGGTGATCGAAAATGTAGTGGTGTTCGAGGATTTAGGAGCAGATTATTTGGAAGAACTTCTGAGATCATCTGAGAATTAG 618 47.73 MDSDFSPQSSFGSPDVSAWEWDGFGFGNGTLPFDENDSEEMLLYGLLSEAREEVSDRIEVEEVVSESNGKPIKDKCFRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFAMRGSAAILNFPVERVRESLEAMNCRASDGGGSPVMALKRKHSMRRKYGGKKNKMREVVIENVVVFEDLGADYLEELLRSSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 938904 939521 - Bda000915.1 Bda13g00069 18200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00069 205 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Bda13g00069 205 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Bda13g00069 205 PANTHER DNA-BINDING DOMAIN 28 202 IPR044808 GO:0003700|GO:0009873
Bda13g00069 205 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Bda13g00069 205 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Bda13g00069 205 SUPERFAMILY DNA-binding domain 76 136 IPR016177 GO:0003677
Bda13g00069 205 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Bda13g00069 205 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Bda13g00069 205 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Bda13g00069 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00273 Bda-Chr8:2834233 Bda13g00069 Bda-Chr13:938904 6.70E-59 dispersed
Bda10g00555 Bda-Chr10:39523675 Bda13g00069 Bda-Chr13:938904 2.46E-28 dispersed
Bda13g00069 Bda-Chr13:938904 Bda09g00741 Bda-Chr9:12928612 6.41E-31 dispersed
Bda13g00069 Bda-Chr13:938904 Bda13g00070 Bda-Chr13:950161 7.89E-28 tandem
Bda07g01182 Bda-Chr7:14229198 Bda13g00069 Bda-Chr13:938904 6.72E-64 transposed
Bda13g00069 Bda-Chr13:938904 Bda05g00850 Bda-Chr5:57029235 7.94E-56 wgd
Bda13g00069 Bda-Chr13:938904 Bda08g00272 Bda-Chr8:2826716 1.48E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16835 PF00847 AP2 1.70E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00069 K14516 - jre:109007057 263.848