Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda13g00069 | ATGGATTCCGACTTCTCGCCGCAATCTTCGTTTGGGTCGCCAGATGTCTCTGCATGGGAATGGGATGGTTTTGGATTTGGTAATGGTACTCTGCCTTTCGATGAAAATGATTCTGAAGAAATGCTTCTCTATGGACTTCTATCTGAGGCCAGAGAAGAAGTGTCAGACAGAATTGAGGTAGAAGAGGTCGTTTCAGAATCCAACGGAAAACCCATAAAGGATAAGTGCTTCAGAGGAGTGAGAAAGCGGCCGTGGGGGAAATTTGCGGCGGAGATAAGAGATTCAACGAGAAATGGCGTGAGGGTCTGGTTGGGAACGTTCGATAGCGCTGAAGCAGCAGCGTTGGCTTACGATCAAGCCGCTTTTGCAATGAGGGGATCGGCGGCGATCCTCAATTTTCCAGTGGAACGAGTGAGGGAATCACTTGAAGCGATGAACTGTAGAGCCTCCGACGGCGGCGGCTCTCCGGTGATGGCTCTGAAAAGAAAGCATTCAATGAGAAGGAAATACGGAGGGAAGAAAAACAAAATGAGAGAGGTGGTGATCGAAAATGTAGTGGTGTTCGAGGATTTAGGAGCAGATTATTTGGAAGAACTTCTGAGATCATCTGAGAATTAG | 618 | 47.73 | MDSDFSPQSSFGSPDVSAWEWDGFGFGNGTLPFDENDSEEMLLYGLLSEAREEVSDRIEVEEVVSESNGKPIKDKCFRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFAMRGSAAILNFPVERVRESLEAMNCRASDGGGSPVMALKRKHSMRRKYGGKKNKMREVVIENVVVFEDLGADYLEELLRSSEN | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 938904 | 939521 | - | Bda000915.1 | Bda13g00069 | 18200 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda13g00069 | 205 | PRINTS | Ethylene responsive element binding protein signature | 100 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00069 | 205 | PRINTS | Ethylene responsive element binding protein signature | 77 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00069 | 205 | PANTHER | DNA-BINDING DOMAIN | 28 | 202 | IPR044808 | GO:0003700|GO:0009873 | |
Bda13g00069 | 205 | SMART | rav1_2 | 76 | 140 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00069 | 205 | Gene3D | AP2/ERF domain | 76 | 136 | IPR036955 | GO:0003700|GO:0006355 | |
Bda13g00069 | 205 | SUPERFAMILY | DNA-binding domain | 76 | 136 | IPR016177 | GO:0003677 | |
Bda13g00069 | 205 | CDD | AP2 | 77 | 135 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00069 | 205 | Pfam | AP2 domain | 76 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00069 | 205 | ProSiteProfiles | AP2/ERF domain profile. | 76 | 134 | IPR001471 | GO:0003700|GO:0006355 | |
Bda13g00069 | 205 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 28 | 202 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda08g00273 | Bda-Chr8:2834233 | Bda13g00069 | Bda-Chr13:938904 | 6.70E-59 | dispersed | |
Bda10g00555 | Bda-Chr10:39523675 | Bda13g00069 | Bda-Chr13:938904 | 2.46E-28 | dispersed | |
Bda13g00069 | Bda-Chr13:938904 | Bda09g00741 | Bda-Chr9:12928612 | 6.41E-31 | dispersed | |
Bda13g00069 | Bda-Chr13:938904 | Bda13g00070 | Bda-Chr13:950161 | 7.89E-28 | tandem | |
Bda07g01182 | Bda-Chr7:14229198 | Bda13g00069 | Bda-Chr13:938904 | 6.72E-64 | transposed | |
Bda13g00069 | Bda-Chr13:938904 | Bda05g00850 | Bda-Chr5:57029235 | 7.94E-56 | wgd | |
Bda13g00069 | Bda-Chr13:938904 | Bda08g00272 | Bda-Chr8:2826716 | 1.48E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16835 | PF00847 | AP2 | 1.70E-14 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda13g00069 | K14516 | - | jre:109007057 | 263.848 |