Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00083 ATGGCTGGGATTGTGAATGAGGAGTCCGTTGGAAGGTCCATTGAGGGGATTTCAAGTGGCCTCCGCAGCCAATCTGGGGAGACATTAGCAGAATGGCGGTCTTCTGAGCAGTTGGAAAATGGAACTCCTTCAACATCACCTCCTTATTGGGACTCTGATGATGATTATGATGGTGGACCAAAACCTTCTGAGTTATATGGAAAATATACATGGAAAATAGAGAAGTTTTCTCAGCTCAACAAAAGAGAACTGCGGAGTAACGCTTTTGAGGTTGGTGGTTACAAATGGTACATTTTAATATATCCTCAAGGTTGTGATGTATGCAACCATCTCTCTTTATTTCTGTGTGTTGCAAATCATGACAAACTTCTGCCAGGTTGGAGCCATTTTGCCCAGTTTACCATAGCTGTGGTGAATAAAGATCCAAAAAAATCAAAATATTCTGGTTTGTTGGTTCCGACTTCCTTTCTTGGATTTATGATTTGGTTTAATAAGCATGATAGACTATGTGTTACTTGTACAGACACATTGCATAGATTCTGGAAGAAAGAACACGACTGGGGATGGAAGAAGTTCATGGAGCTGTCTAAAGTCTTAGATGGCTTCATTGATGCTGACACTCTCATAATAAAGGCTCAAGTTCAAGTGATCAGGGAAAGAGCAGATCGACCATTTCGTTGCCTGGATTGTCAGTATAGGAGAGAGCTCGTAAGAGTATATTTGACAAATGTGGAGCAAATTTGCCGACGCTTTGTGGAAGAGAGAAGAAGCAAACTTGGGAAATTGATAGAGGATAAAAATAGGTGGTCAAGTTTCTGTGCTTTCTGGTTGGGAATTGACCAAAGTTCTAGACGCCGCATGTCTAGGGAGAAGACTGATGCAATACTAAAAGTAGTTGTAAAACATTTCTTTATAGAGAAGGAAGTCACGTCTACTTTAGTGATGGATTCCTTATATAGTGGACTGAAAGCTCTTGAAGGCCAGACAAAGATGAAGAAATTGGGGGGAAAACTGTTGGAAGCTGAAGAAATGCCAGCTCCAATTGTTTGCATAGAGAAAGATATGTTTGTTTTAGTAGATGATGTGTTACTACTACTTGAGAGAGCTGCTTTGGAACCATTGCCTCCGAAGGAGGAGAAGGGACCTCAGAATCGCACAAAGGAAGGTGGCTCAGGAGAGGATTTCAACAAAGATTCTATTGAACGCGATGAAAGGCGTCTTACTGAATTAGGTCGCAGAACTGTGGAAATATTTGTCCTTGCTCATATATACAGCAATAAAGTTGAGGTTGCGTATCAGGAAGCTGTTGCATTGAAGAGGCAAGAAGAGCTAATTCGTGAAGAAGAGGCAGCATGGTTGGCTGAAAGTGAACAAAAGGCAAAACGTGGTGCAACAGAGAAAGAAAAGAAAGCAAAGAAAAAACAGGCTAAACAGAAACGAAACAATCGGAAAGGAAGGGAAAAAGGAAGAGAAGAAAGGATAATACAGGACATGCATGAGAAAGAAGCTCCTAGTGATGAGAAGGACTCAGTTATGAAGGAGATGCAGCCTGTGCTTGAGAAGCCTGATATGCTGGAAGATGTTTCCGATGTGTCAGATTCAGTGGATGCTGTTGGTGAAGCACTTCATCATGACTCCGAAGATAGAGATGCTAGTCATGTGAATTGGGATACTGACACATCAGAAGTTCATCCTCCCATGGAAGCTAGTAGCAGCTTAGTTAGCAACTCAGTCCCATCAGTGGTAATGAACGGGTCTTACAAAGCCAGCTCCTTCTGTAATTACAAGAACCAACAAACACCTAGCAGAAGAAAGAACAAACAAGGTAATGCAACCTATGACAGGAATACATGGGGAAATGAGACAGACAGTCAGCCATCAGGGCATGCACCTGATACAGGGGATCAAAATGATATGTCTGAAAGCAGCAAACCTGGTGAATCTGAATCTGAGGCTGCCGTGGGTGCCTTCTCTCATCAGGATCAATTAAGGGGACTTGAACATGAAGTGGCTAAGAAGGAGAAAGGGGTGGTAGCAGTTCAGCGCAAACCAAGCCCTAAAAAACAGGTTGATACAGAAAGAGCACTTAAAGATAAGACGTCAGTTGTAACATCCTCTTCTCAAAGTACTCAGATAAATCTTCCTTCAGCTTTTGAACAGAAGTCTGAGCATCGGAGTAGTGCTCATCTTCAAAAGACGTTTTCAAATGGATCCAATGTGAAGGCTGCTCCAGTAGTTACTTCACCCCATTTAGCATGTGCATCAAAGAACGAGGTTCAAAAGACTCCAACCCCAAAAATAACTGAAAAGGCTGTGGCACAACAAGTTACCATGATGTCTAGACCTTCTAGTGCTCCTCTGATCCCTGCTCTCAGGCATCCTGCCCCTGTTGTTTCTGTGGCCCAAACAACCCAGCTACTTTCCCGATCTGCAAGTGCTGCTGGTCGGTTAGGTCCTGACTCCTTACCTGCTACCCTTAGCTATGCACCACCGCAATCTTACAGAAATGCCATGATGGGTAACCACATTGCTATTAGTACTACCAGTTTCACTCAACCTAGCTCTTCAACTCCCGGAGTAAACCCATCTCCAGTATACTCACAAGCAACCGCCTTGGTATCTACGCCAATGTTTTCATCACAAAATTCTGACAGGTTGGATTCAAGTCCTATCAAATCAAGTATTCCTCTTGGCATGGTCAGTAGGGATCTCTTACCAAATGGCATGCAGTGGATGGATGGTTCACAAGTGGATTGTGGCAGAGGCGTCCACTTCAATACCTCCTTGTTGAATGAGGGTCAGAACCTGGATTTTTACACCCAACTGCACGGGGGAATTCGTGAGCCATTGTCAGCTGATTTTTCTGCTTGTACATCTGGCCGGCATGTGCAAGATTTGACGGAAGAATTCCCCCATCTTGATATCATAAACGATCTACTTGATGAAGAACATTGTGTGGGGAAAGCAGCTACGACAAGCTCAATATTCCCATCTCTCAGCACTGGACCAACCTTTTTGAATAGGCAGTTTTCGCTTCCTGCCGATGTATCTGGTGATGTGGGTTCGCCAACCAGCTCTTGCAGGTTTGAGCGGACCCAAAGTTATCACGAAGGAGGGTTCCGAAGGGGCTACAGACCTTCAGTTGGGAATTTTGAACCAGGTATGGATTATATGCCACCAGGCACTACACTACCTTATGTCAACGGTCAGGTTGATGGGATGATTTTCAACCATTGGCAGATCAATTCAGATCCATCTTTACTTGGTTCAATCAGCTCGGAATATGAAGCCTACCCCTATCTCAATCCAGAGTACTCAAACATGGCATGCGGAATAAATGGCTACAACATTTTCCGGCCTTCAAATGGGCACTGA 3375 43.7 MAGIVNEESVGRSIEGISSGLRSQSGETLAEWRSSEQLENGTPSTSPPYWDSDDDYDGGPKPSELYGKYTWKIEKFSQLNKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDPKKSKYSGLLVPTSFLGFMIWFNKHDRLCVTCTDTLHRFWKKEHDWGWKKFMELSKVLDGFIDADTLIIKAQVQVIRERADRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRSKLGKLIEDKNRWSSFCAFWLGIDQSSRRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQTKMKKLGGKLLEAEEMPAPIVCIEKDMFVLVDDVLLLLERAALEPLPPKEEKGPQNRTKEGGSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIYSNKVEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGATEKEKKAKKKQAKQKRNNRKGREKGREERIIQDMHEKEAPSDEKDSVMKEMQPVLEKPDMLEDVSDVSDSVDAVGEALHHDSEDRDASHVNWDTDTSEVHPPMEASSSLVSNSVPSVVMNGSYKASSFCNYKNQQTPSRRKNKQGNATYDRNTWGNETDSQPSGHAPDTGDQNDMSESSKPGESESEAAVGAFSHQDQLRGLEHEVAKKEKGVVAVQRKPSPKKQVDTERALKDKTSVVTSSSQSTQINLPSAFEQKSEHRSSAHLQKTFSNGSNVKAAPVVTSPHLACASKNEVQKTPTPKITEKAVAQQVTMMSRPSSAPLIPALRHPAPVVSVAQTTQLLSRSASAAGRLGPDSLPATLSYAPPQSYRNAMMGNHIAISTTSFTQPSSSTPGVNPSPVYSQATALVSTPMFSSQNSDRLDSSPIKSSIPLGMVSRDLLPNGMQWMDGSQVDCGRGVHFNTSLLNEGQNLDFYTQLHGGIREPLSADFSACTSGRHVQDLTEEFPHLDIINDLLDEEHCVGKAATTSSIFPSLSTGPTFLNRQFSLPADVSGDVGSPTSSCRFERTQSYHEGGFRRGYRPSVGNFEPGMDYMPPGTTLPYVNGQVDGMIFNHWQINSDPSLLGSISSEYEAYPYLNPEYSNMACGINGYNIFRPSNGH 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1057155 1063467 + Bda000931.1 Bda13g00083 18214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00083 1124 MobiDBLite consensus disorder prediction 537 557 - -
Bda13g00083 1124 SUPERFAMILY TRAF domain-like 67 219 - -
Bda13g00083 1124 MobiDBLite consensus disorder prediction 374 400 - -
Bda13g00083 1124 MobiDBLite consensus disorder prediction 592 712 - -
Bda13g00083 1124 MobiDBLite consensus disorder prediction 456 471 - -
Bda13g00083 1124 MobiDBLite consensus disorder prediction 16 54 - -
Bda13g00083 1124 MobiDBLite consensus disorder prediction 16 49 - -
Bda13g00083 1124 MobiDBLite consensus disorder prediction 485 528 - -
Bda13g00083 1124 Pfam MATH domain 170 216 IPR002083 GO:0005515
Bda13g00083 1124 Pfam MATH domain 73 146 IPR002083 GO:0005515
Bda13g00083 1124 MobiDBLite consensus disorder prediction 456 577 - -
Bda13g00083 1124 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 59 221 IPR008974 GO:0005515
Bda13g00083 1124 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 1 1124 - -
Bda13g00083 1124 ProSiteProfiles MATH/TRAF domain profile. 66 214 IPR002083 GO:0005515
Bda13g00083 1124 SMART math_3 68 198 IPR002083 GO:0005515
Bda13g00083 1124 MobiDBLite consensus disorder prediction 592 647 - -
Bda13g00083 1124 MobiDBLite consensus disorder prediction 662 698 - -
Bda13g00083 1124 CDD MATH 67 215 IPR002083 GO:0005515
Bda13g00083 1124 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 1 1124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00083 - - - qsu:112033143 1356.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00616 Bda13g00083 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00616 Bda-Chr11:6221698 Bda13g00083 Bda-Chr13:1057155 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g630 . . . . . Bpe14g01234 . . . . . Cma14g01788 Car06g01154 Car14g01608 . Cpe08g00316 Cpe03g01496 . . . . . . . . . . . . . . . Cone15ag0145 Cone7ag0302 Cone4ag0302 Lsi05g01689 . . Cme06g00531 Blo02g00618 Blo07g00248 Bda11g00616 Bda13g00083 . Bpe13g00570 Bma02g00802 Bma06g01587 . Cmo06g01350 Cmo14g01824 . . . . . . . . . . . . . Cla05g00474 Cam05g0515 Cec05g0529 Cco05g0529 Clacu05g0516 Cmu05g0490 Cre05g0556 . Csa03g01250 Chy06g00504 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003455 2 0 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 3 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00083 Bda_Chr13 FPKM 4.033153 4.342242 13.340957 13.91151 33.310383 38.416634 33.475368 6.624229 6.92823