Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00088 ATGGGGGAAAGCTTAGGCGTTGCGGAGAGAAGCGACGCCAATGGAAGCGACCGTATCAAAAAGACTTTAGTGACTGTTCCTCATTCTGATGGTAAAGAAAATATGCCTACTGCTGAGTGTCTGAAGGATATCAAGAAGAATCGAATTCTAGTCTCCAATAGGAAGAACACATTATCTTTCTTCCTCAACCTAGCCAAGAGATACATTAAGCAGTACGGTGAAATTGAGCTCTGTGGCTTGGGCAAAGCTATTCCAACTGTTGTGACAATTTCTGAGATTCTGAAGAAAGAAGGATTGGTGACTGAGAAAAAATTACTAATATCTTCCATTAGATCAGAGGGAGAGAACGGAAGGGTATTTCTAAAAGCCAAGATCGAGATTTCGATGAAGGCTGTCAAACTCGATGATGCCACCATTACTGCCACTAAAGATGACCTGTTGACGCAAATGAAAAGTGGGTAG 462 41.99 MGESLGVAERSDANGSDRIKKTLVTVPHSDGKENMPTAECLKDIKKNRILVSNRKNTLSFFLNLAKRYIKQYGEIELCGLGKAIPTVVTISEILKKEGLVTEKKLLISSIRSEGENGRVFLKAKIEISMKAVKLDDATITATKDDLLTQMKSG 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1183163 1184191 - Bda000940.1 Bda13g00088 18219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00088 153 PANTHER DNA/RNA-BINDING PROTEIN ALBA 3 32 136 IPR014560 -
Bda13g00088 153 Pfam Alba 47 99 IPR002775 GO:0003676
Bda13g00088 153 PANTHER ALBA DNA/RNA-BINDING PROTEIN 32 136 - -
Bda13g00088 153 MobiDBLite consensus disorder prediction 1 20 - -
Bda13g00088 153 Gene3D - 45 149 IPR036882 GO:0003676
Bda13g00088 153 SUPERFAMILY AlbA-like 46 128 IPR036882 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00088 - - - csv:101216135 106.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00359 Bda-Chr12:4159863 Bda13g00088 Bda-Chr13:1183163 2.34E-28 dispersed
Bda13g00088 Bda-Chr13:1183163 Bda07g01191 Bda-Chr7:14326960 3.94E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g621 . . . . . . . . . . . Cma14g01783 . Car14g01604 . . Cpe03g01492 . . . . . . . . . . . . . . . . . . Lsi05g01677 . . Cme06g00538 Blo02g00610 . . Bda13g00088 . . . . . . Cmo14g01819 . . . . . . . . . . . . . Cla05g00481 Cam05g0523 Cec05g0536 Cco05g0537 Clacu05g0523 Cmu05g0495 Cre05g0561 . Csa03g01256 Chy06g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024626 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00088 Bda_Chr13 FPKM 18.045464 19.813326 19.743862 18.565752 27.081095 30.234964 26.310102 19.847857 16.655636