Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00089 ATGAATGAAGAAATTGGGCAGACAGATCCAGCAACTGAGTTACAGCTTGATCTGGCTTATTTGCATCAGTACAACGAAAACATATTGAACAGTGATTCAGGTGCAGGTGTAAATGCGGGTTCAATGGCTGACATTGCATTTGTCACCACTGATCCCCTGTCTGAATTAGTATGGTCTCCACATAAAGGTTTAAGTCTCAAATGTGCTGATTTTAGCTTTGGTAATAGAAAACCTTCTATGTTAAGGGGTGTTGGACCAAGTAATATGAATCTTGCACTCGCAGAGAGTATTACAGCTGATAAGTCTTATTCCGAGAAACTAGTACAAGATAGAATTTTATCACCTCATTCACAGAATGAATGCGACAGCAAAGATATATCAACGGGGTCGGACATGGGTGATATTGGTACATCATTAAGCAGATCGGGGCATATCCTCGACAAAGGAATTAGTTGTGAGGCAGAAGAAATGAATAACACAGCTGGAGTCTCATTCCCATGCTTCAAACAAGAGGAGGATCTTCCTGACATTGTCGTAGAGGAAGTTGCTGATCCAATAATCACACAGATGGTTGAAGCAGGACATGTAAATGAAAGAAAAGCTGATGTCCTATTCGCTGAAAGAGATGATATTGAGCCTGTTATAGCACGACTTGAAAAACTTACTGATCTTACAGGAGAAAACAGTGTTGCAGGATGTGGCAATATGATGATGGGTGTTGATGATACTCTAGCATCTGAAGCTCATGTGCTAGAGGAATGTCAAATTTTGGCTTCTCAGCCACAGAATCCAGATCCCTCAAGCTCACGGCCTTTAGAGAAACGGGAATCAACTGCAGAAAATGAGTTGCAGAAATTAAATAATGAAAATGGTTGTGATGAGCCCGGGAAAATTGAAGCAGCAGATTCACTCCGCCACCAGCCAGTTGAAAAGTTCCAATCTATTGAAGAGTCTGTTGCTGCTGACTGTTTGCGCTCAAACAGCAGAATCCATAAGAAAAGAAAGAAAGGCAAGAAAAAGGCCTTGTTTGATGGACATGGTGATGGCAGAAATTCGAATGACAAAGGTGACAGCTATGAAAGCGTCGAAAGCTGCAACAGTGCAGAAATATTTTGTAGGGGAAAAAAGATATGGAATGAGCAACAGTCGGTCGTGGAACGTAGAAGAGTTGAAAATAAAATTCATGATACCACAAGGTCAACATCTGTTATAGGAAAAGACAGCTCTTTTATGATTTGGATATCAAATATGATGAAGGGGTTCCCAAAGTCAATTCCAGAGAAGGAATCTTCTCTTGCTCTTCCCCATGCACATTCTGATAATGAACACAACGACTCTAACAAGGAATCTCTGATATGGAAGAAAAATCAAGACCTACAGCACCAGCGAATGGGTTTTCAATCAATTTTTCGATCTTTGTATGGCCTGAGCACAAAGGGTCAACATTTATTGTCTCATAATGCCCATAACGAGGAAGAGGAGAGATCTGAGGATCATATTAAAGAGGCCTATGATGCGGATGCTGCTCCATTGGCTTTCCATAAAGAGAACAGTAATTCTTGTGGACAAGTGATTCTTACAAGCCAGAACCTTAACAAATCTACGTTGGGAAACAAAAATAATGAATCTGTATCAGGAAACAGTGCAGAGGCTGCTATAAGGCCCAATGCTGGCATTCATGAGAGTCAGATGGCTGCGCTAGGAGAGAGGAGAGTTGCATGCAATGCTCCTCCTATAATTGGTGAGGGTAAATTTGAAACGAGCTCCAGTTCTTCCTTCCCCCGGAAGAGAAAGAGTGTTGAGAATATTGACTCTGCGGTACCATCTGAAGTAAAGACTAATCTCAGTTTAGGTAATGCAGGTAAACATCTTAAAAGCTTATGGATTACTCGGTTATCTATGAAAAGCTCGCAAGCAGTGGCAAATCTAGATTCTGAGGACCAAAACATAAATGACCGTCTTCAGTGTGGAAGTCATATTCTGTGTTCTCAGAACCAGGTTGATTTTACTAGTGAACAAAAAGAGCAAAAAAGCGATGAATTACATAGTATCTCGAAAGGAGAAATGCATATATGTCCACCGTATTCTGAGTGTACTACTGGTTTTGATATAATTGAAGGCCATAATGATCAGTCATTGGCAAATAAGTTCAATCCTATGTTGCCTGCAACTAAATCCAGAAGGTGTGTCATGGCGTCTGTCTTTGCTAGGAGATTAGATGCCTTAAAACATATCCCATCAAACATGAGAGAAATTGGCACTGACGAAAGGATGATATGTTTCTTTTGTGGTTCCAGAGGTCATCATTTACAAGATTGTTCAAAAATAGCTGAAAGTGAAGTTGTTGAGCACCTTTCAAAGATTCCAAGCTCATTTGACGGGCCTGCTGAAGTTTCTTGTTTGTGCATTAGATGTTTTCAGCTCAATCACTGGGCCGTTTCTTGTCCTCAGAGTAGAGCTCAATATCATCCTGAATCTAATTGTTCTTTGGTTAATCATTTCGGGAATGGGGATAAGCACCCTTCAAACAGTGGGTTAAATACCAAGTTTCTAATTGGTGATAGTAGCAAACCTCAACCTCCTACGTGCATTAAAAATCATATTAATGATCCTGAACTGGATGATCTTAATCTGAGAAGCAAGCCAGTACATAATAAAACCTCTGAACAACTGAGATCTATTGAGGATTCCAATGAAAGATTCATGGCTTCAAATTGTATGGAGAAAAAAGAATCCGAGATAGTTCGATTTACTACTATAGATGTACGAGGAGTGTTCGATATGATAAAGAAGCTTCAATTGTCCCGCACAGACATTCTAAAATGGATGAACTCCAATATGTCACTGGTCAAACTTGAGGGCTTATTCTTGCGTCTACGGCTTGGAAAGTGGGAAAAAGGATATGGAGGCACCGGATACCATGTGGCTTTTGTAACGGGGACGCAGAATGCCAGAAATTCTATCTCCGTGAATGTCGGCGGCGTAGAATGCTTGACCCAAAGCCAATCTATCTCCAATCACGATTTCCTTGAGGAGGAGCTGAAAGCATGGTGGCATGCAACATCAAAAGATAGAAGCCAAGACATAGTTGAAGCAGATTTGAAAGCCAAATTAAAGAAGAAAAGGCTTTTAGGATTATAG 3141 40.56 MNEEIGQTDPATELQLDLAYLHQYNENILNSDSGAGVNAGSMADIAFVTTDPLSELVWSPHKGLSLKCADFSFGNRKPSMLRGVGPSNMNLALAESITADKSYSEKLVQDRILSPHSQNECDSKDISTGSDMGDIGTSLSRSGHILDKGISCEAEEMNNTAGVSFPCFKQEEDLPDIVVEEVADPIITQMVEAGHVNERKADVLFAERDDIEPVIARLEKLTDLTGENSVAGCGNMMMGVDDTLASEAHVLEECQILASQPQNPDPSSSRPLEKRESTAENELQKLNNENGCDEPGKIEAADSLRHQPVEKFQSIEESVAADCLRSNSRIHKKRKKGKKKALFDGHGDGRNSNDKGDSYESVESCNSAEIFCRGKKIWNEQQSVVERRRVENKIHDTTRSTSVIGKDSSFMIWISNMMKGFPKSIPEKESSLALPHAHSDNEHNDSNKESLIWKKNQDLQHQRMGFQSIFRSLYGLSTKGQHLLSHNAHNEEEERSEDHIKEAYDADAAPLAFHKENSNSCGQVILTSQNLNKSTLGNKNNESVSGNSAEAAIRPNAGIHESQMAALGERRVACNAPPIIGEGKFETSSSSSFPRKRKSVENIDSAVPSEVKTNLSLGNAGKHLKSLWITRLSMKSSQAVANLDSEDQNINDRLQCGSHILCSQNQVDFTSEQKEQKSDELHSISKGEMHICPPYSECTTGFDIIEGHNDQSLANKFNPMLPATKSRRCVMASVFARRLDALKHIPSNMREIGTDERMICFFCGSRGHHLQDCSKIAESEVVEHLSKIPSSFDGPAEVSCLCIRCFQLNHWAVSCPQSRAQYHPESNCSLVNHFGNGDKHPSNSGLNTKFLIGDSSKPQPPTCIKNHINDPELDDLNLRSKPVHNKTSEQLRSIEDSNERFMASNCMEKKESEIVRFTTIDVRGVFDMIKKLQLSRTDILKWMNSNMSLVKLEGLFLRLRLGKWEKGYGGTGYHVAFVTGTQNARNSISVNVGGVECLTQSQSISNHDFLEEELKAWWHATSKDRSQDIVEADLKAKLKKKRLLGL 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1197428 1201943 - Bda000941.1 Bda13g00089 18220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00089 1046 MobiDBLite consensus disorder prediction 257 305 - -
Bda13g00089 1046 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 56 1045 - -
Bda13g00089 1046 MobiDBLite consensus disorder prediction 341 357 - -
Bda13g00089 1046 SUPERFAMILY Plus3-like 926 1039 IPR036128 GO:0003677
Bda13g00089 1046 PANTHER UNCHARACTERIZED 56 1045 - -
Bda13g00089 1046 Gene3D - 747 821 - -
Bda13g00089 1046 ProSiteProfiles Plus3 domain profile. 923 1046 IPR004343 GO:0003677
Bda13g00089 1046 SMART c2hcfinal6 759 775 IPR001878 GO:0003676|GO:0008270
Bda13g00089 1046 SMART c2hcfinal6 801 817 IPR001878 GO:0003676|GO:0008270
Bda13g00089 1046 Gene3D - 925 1041 IPR036128 GO:0003677
Bda13g00089 1046 MobiDBLite consensus disorder prediction 330 360 - -
Bda13g00089 1046 SMART rtf1 923 1023 IPR004343 GO:0003677
Bda13g00089 1046 ProSiteProfiles Zinc finger CCHC-type profile. 760 775 IPR001878 GO:0003676|GO:0008270
Bda13g00089 1046 Coils Coil 269 289 - -
Bda13g00089 1046 Pfam Plus-3 domain 929 1020 IPR004343 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00089 - - - qsu:112027474 615.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00614 Bda13g00089 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00614 Bda-Chr11:6208958 Bda13g00089 Bda-Chr13:1197428 0 dispersed
Bda13g00086 Bda-Chr13:1111211 Bda13g00089 Bda-Chr13:1197428 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g618 . . . . . Bpe14g01228 . . . . . Cma14g01781 . Car14g01602 . . Cpe03g01490 . . . . . . . . . . . . . . Cone14ag0137 Cone15ag0142 Cone7ag0299 Cone4ag0300 Lsi05g01674 . . Cme06g00540 . . Bda11g00614 Bda13g00089 . Bpe13g00571 Bma02g00807 . . . Cmo14g01817 . . . . . . . . . . . . . Cla05g00483 Cam05g0526 Cec05g0539 Cco05g0539 Clacu05g0525 Cmu05g0497 Cre05g0564 . Csa03g01258 Chy06g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004918 3 0 0 1 2 1 1 1 1 1 1 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 5 5 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00089 Bda_Chr13 FPKM 2.469551 4.004593 3.556356 4.571398 4.217048 4.606108 4.152811 3.814985 5.077997