Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00094 ATGATGCTCAGTCAACTGCAGACCCCACACCTATTGCTCATGCCTCTTCGTGCTCCTAAGCACCGCCGCAGATCCTCAACTACGCCGAAATTAAAGCACTTCCATTGCTGGTGGATGTATTGTTCAGCTGTTCGGGAACACTTTATGGTTTATGGAAGAAAAGAGGTCAGTCATCAACAGAAATGTTGCATAATACAATACACGTCGTCTTGGAATAACGGAAATGATTTACATACCAATGATTGCAGGACTTGTGGGAGTAATATTTTTCAGGGTCAAGGAAGAAAGTTAATGCTAGGATCAGTGTCAGCCTATTGCCTGCTCAGCCTGGCACAGCTGAAGTTTATCAATACATTTATTCAAGAAATACTGCCTCGTGTGCTTCAGACTTTTAGGAAAACTAGCTTGCCTTTTGCATGTGTATCAAATTCCATCAATAAACCCATACCTCTTCAGTTGCATGTGTACTTGCCTTCTATACAAGATATCAAATGGTGCTTTGCGAGGTTTTTTTATCTTTTTGACATCCAACTGGAAAGAAATGTTGCCACGTTCTTCCTGGCCCTCCTTGTTGCTTGCTTCTCATTTGTGGTCATTGGTGGCATATTGTTCTTCAAGTTCAGGGGCAGCACACAATCTTTGGAGGACTGCTTGTGGGAGGCATGGGCTTGTCTCTGTTCATCATCTACTCATTTAAAACTAAAAACACGATTTGAACGTGTTATTGGACTGGCTCTTGCAATATGGGGCATATTATTTTATTCTCGTCTACTGAGTACGATGACAGAACAGTTTAGGAACAACATGCAAAGACTCAGAGAAGGGGCCCAAGTTCAAGTTTTGGAGTCTGATCATATCATTATTTGTGGATATAATAGTCATTTATCTTTCATATTGAGGCAGATAAACAAATATCATGAATATACTGTGCGCTTAGGTACTGCGACTGCTAGGAGGCAGAGAATTCTTCTTATGTCTGATATTCCAAGGAAGCAGATGGACAAGTTAGCTGATAATATTACTAAAGACCTTAACCATATTGATCTACTTACAAAGAGCTGCAGCCTTAGCTTAACAAAATCGTTTGAAAGAGCTGCAGCAAATAAGGCACGTGCCATAATTATATTGCCAGTTAAGGGAGATCGGTATGAAGTTGATACAGATGCATTTCTTTCTGTACTAGCACTTCAACCCATTCCAAATATGGAGTCTATCCCGACAATAGTTGAAGTTTCGAGTTCCAGCACATGTGATCTCCTAAAGTCAATATCAGGGTTGAAAGTAGAGGCTGTAGAGAATGTTGCTTCTAAATTATTTGTTCAGTGCTCTCGGCAAAATGGGCTAGTAAAAATTTACAAACACTTGCTTAATTATCGAAAAAATGTATTTAATCTTTGCAGTTTTCCCAATTTGATTGGAATGAAGTATAGGCTTATACGTCATGGGTTTCAAGAGGCAGTTGTTTGTGGTATATATAGGAGTGGGAAGGTGATCTTCCACCCTGATGATGATGAGATTCTGCAGGAAACTGACAAACTGCTGCTCATTGCACCTCTTCATGGAGTAAAGAAAACTTGGGCAGTGAACGAAGGAAGTGATGGTATTGCTAGTAAAGTACTTGAAAGTGAGGAAAATAACAGTGAAGCTCTTTGTCAATCCTGTGACACAAATAAAAAACTTGTAAATGTTAAAAAGCATTCCTTCAAACGGGGTTCCAAGACATCAAAATGGACACTCGGACCGAAAGAACGAATACTTGTGCTTGGTTGGCGTCCAGACGTTGTAGAAATGATTGAGGAGTACGATAATTATCTTGGACCTGGTAGTGTTTTGGAAATTCTATCAGATGTTTCAGTAGATGAAAGGAACCGGGCAATCAAAGTTTCAGGTCATGGGAAAACAAAACATGTCCAAGTTTCTCACAGGTTAGGGAACCCTATGGACTATGATACCTTGGAGCAAACCATTTTGAATTTTCAAAATGCTGTAAAAAATGATGACGATACGCCTTTGTCCATTGCGGTGATATCTGATAGAGGATGGCTTGTTGGTGATCCATCTAGGGCAGACAAGCATTCAGCTTATGCTCTTCTTCTTGCCGAAAGCATCTGTAAGAAACTTGGAGTAAAGGTACAAAATCTCGTTGCAGAAATTGTTGACTCGAAATTGGGAAAACAAATTACAAAAATCAAACCTTCCCTAACTTACATTGCAGCGGAGGAAATAATGAGTCTTGTCACAGCTCAAGTATCACAAAACAGGGAACTGAGTGAAGTCTGGAAAGACATTCTGAATGCAGAAGGTGATGAAATATATATGAAGAATCTAAGTTTCTACATGAAAGAAGGAGATAATCCATCATTCAATGAGCTATCTGAATTAGCACATCTAAGAAGAGAAGTCGTCATAGGCTATGTTAAAGACAATAAGATGGTTATGAATCCAATCCCTAAGTCAGAACCTTTATCTCTTGAATTGACTGATTCTTTAATTGTTATATCTGAGATGGAGGGAGAGCAACCTATCCTCCAGTAG 2535 39.49 MMLSQLQTPHLLLMPLRAPKHRRRSSTTPKLKHFHCWWMYCSAVREHFMVYGRKEVSHQQKCCIIQYTSSWNNGNDLHTNDCRTCGSNIFQGQGRKLMLGSVSAYCLLSLAQLKFINTFIQEILPRVLQTFRKTSLPFACVSNSINKPIPLQLHVYLPSIQDIKWCFARFFYLFDIQLERNVATFFLALLVACFSFVVIGGILFFKFRGSTQSLEDCLWEAWACLCSSSTHLKLKTRFERVIGLALAIWGILFYSRLLSTMTEQFRNNMQRLREGAQVQVLESDHIIICGYNSHLSFILRQINKYHEYTVRLGTATARRQRILLMSDIPRKQMDKLADNITKDLNHIDLLTKSCSLSLTKSFERAAANKARAIIILPVKGDRYEVDTDAFLSVLALQPIPNMESIPTIVEVSSSSTCDLLKSISGLKVEAVENVASKLFVQCSRQNGLVKIYKHLLNYRKNVFNLCSFPNLIGMKYRLIRHGFQEAVVCGIYRSGKVIFHPDDDEILQETDKLLLIAPLHGVKKTWAVNEGSDGIASKVLESEENNSEALCQSCDTNKKLVNVKKHSFKRGSKTSKWTLGPKERILVLGWRPDVVEMIEEYDNYLGPGSVLEILSDVSVDERNRAIKVSGHGKTKHVQVSHRLGNPMDYDTLEQTILNFQNAVKNDDDTPLSIAVISDRGWLVGDPSRADKHSAYALLLAESICKKLGVKVQNLVAEIVDSKLGKQITKIKPSLTYIAAEEIMSLVTAQVSQNRELSEVWKDILNAEGDEIYMKNLSFYMKEGDNPSFNELSELAHLRREVVIGYVKDNKMVMNPIPKSEPLSLELTDSLIVISEMEGEQPILQ 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1268744 1277390 - Bda000946.1 Bda13g00094 18225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00094 844 Gene3D - 277 428 - -
Bda13g00094 844 PANTHER ION CHANNEL POLLUX-LIKE 1-RELATED 4 843 - -
Bda13g00094 844 PANTHER ION CHANNEL POLLUX-RELATED 4 843 IPR044849 GO:0006811
Bda13g00094 844 SUPERFAMILY TrkA C-terminal domain-like 485 525 IPR036721 GO:0006813
Bda13g00094 844 Pfam Castor and Pollux, part of voltage-gated ion channel 741 839 IPR010420 -
Bda13g00094 844 Pfam Castor and Pollux, part of voltage-gated ion channel 432 524 IPR010420 -
Bda13g00094 844 SUPERFAMILY Voltage-gated potassium channels 171 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00094 - - - qsu:111996679 1124.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00929 Bda-Chr10:43675505 Bda13g00094 Bda-Chr13:1268744 8.62E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g599 . . . . . . . . . . Cma06g01348 Cma14g01772 Car06g01169 Car14g01594 . Cpe08g00303 Cpe03g01483 . . . . . . . . . . . . . . . . Cone7ag0291 Cone4ag0286 Lsi05g01659 . . Cme06g00552 Blo02g00601 . . Bda13g00094 . . . . . Cmo06g01360 Cmo14g01808 . . . . . . . . . . . . . . . . . . . . . Csa03g01269 Chy06g00522 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010595 1 0 1 0 0 1 2 0 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00094 Bda_Chr13 FPKM 13.356757 14.504086 11.84579 8.183913 21.281801 19.716022 19.248636 8.324975 8.892359