Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00095 ATGGAGCTTGTACCAATAGGAACCATATTGGTCGTGCTAACAAAACAGGTCATCAAAACGGCTACGGCAGCAAAAGACATTGTCATCGAGAAAGAGAGTTTTAAAGCCCTCTCGAAGCATTTGTTTGACATCGAATCAGTCCTAAAGGAGTTGCAGCTTCAAGAGCTAAACGATTCTCAAGCAGCAAGACAGGCTTTGGAATCTCTCGAATCAGATGTTAAACAAGCAAATAACTTGGTCGAAAAGTATCGAAACAGAAGCCGTTTTTATCTACTCGTCCGGTGTCGCCACATTGTCAACGAGGTCCAACAAGTCACCAGGAAAATCGGAGAGTCTTTGGCTGCCTTATCTCTGGCCAACAATGAGGTTCTCTCGAGAATTTCCGACCAAGTCACCAGGATCCAGAACGAGATGCAGAGGGTGGAATTTCAGGCCTCACACTTTCAGCTTCAGATTGTCAACAAATTGACTCAAGGGCTACAAGACCAAAAAATGGATCAGGGTTTCGCGAACAACATACTCGAGGAAATCGCAAAAGTAGTTGGGGTCCCAGTGGAGCCTTTAGAGATAAGCAAAGAGCTTACAAGCCTCAAAAAGGAGAAAGAAGAAGCTGAATGTAGGAAGGAGAGGGCTGAAGCTCTTTTTTTGGATCAGGTTATTAAGGTTCTGTCTCTAGCCGATGCTGCCAGGGACTACCAAGAAATCATGCGGCAATATTTTCGAAGGGTACGGGCTATAGAGCATTACGAGACGAAGGAAGAATATATATCGCCTCTCAATTCGTTTATTTGTCAAATTAACGGGACGGTGATGGTTGATCCGGTCAGCCTTTGCACTAACACCACTTGTGAGAGGGCTGCAATCCAAGCATGGTTTGAAAGTGGAAAGAGAACTGACCCTGAAACTGGTGATTTTCTGGAAGATACGTCTCTGAGGCCTAATTTTCAGCTGAGGCAGTCCATAGAAGAGTGGCAAGAACTTAACTACTGTCTGAAGATTCGATCTTCGGAGGCGAAGTTATTGTCAGGCGAAGAGCATTCTGTCGAAGAGGCCCTGATATTGATCCAAGATCTAATGAGAGAAAACTCCATTTACAGAGACTGGATTACCATTGGAGGGCTCACAGATTTATTAGTTGTGATCCTTGGAAGTTCACATAACAATGACTTGAAGAGAAAAATTTTGATCACCTTGAAGGATGTTGTAGAAGGGCATGCACGAAATAAGGAAACATTGATAGAAACACAAGGGTGGGATCATATTATTTCCTGTCTAGGCTCTAACTCAGGCACAGAAAAGGCTGCAGTTGAATTAATAGACGAGTTGCTACATGATATGTCGGGATGGAATTTGTCTGCTTGCCGGAAACTTGCAAAGCAATGCAATGCCATTAATTTACTTGTTATCGTTCTAAAAGGACCCGAAAGAGAATCAGCTGGGATAGCAGAAAGAATCTTGATGAAGCTTTTCCACACTGATGAAGTGAGCATTTCCAGTGCTGCTATGTCAGGCTGGTACGATCCGCTCGTTGGTCAGATTGTTAGAGGGCCAGAGTCGTCTGCATTGGCAATGGTGAAAACATTGGTAAATATGGATATTACTGATTCAAATTTGAAGTTCCTTGGTGAGGAAGGGATAGTTCCTCCCTTACTCAAAATGCTATCCGGGAATATCGAGTCCAAAGAGTTGTCTTTGTCTGCTCTAAGTAAACTGTCCGATGTTGACTCCAATAAAAAGCTTATCGCAGCTGCTGGTGGAGTTCCTCCGATTCTAAAATTGATGTTTTCTTCCCACATGCCTTCAATAATTATTGTTAAATGCTCTCACATCATCGAGAAAATATCTTCCGGCGAAGATGCTATCACATTATTTGTGGATGGTGATGGGATTCAACTTGAAATGGAGTCCATAGTGGCTGGTTTATTGGATCTAACCCCCAACTTAGCTTATAACATTCGAAGACCGGCCCTTCGTGCACTGCTCGGCATCTTGAAGTCCGATTCGGAATTGGTCAAGAAAGCGGTTCTCAATGCCAGTGATCTGTTACTTGTACTTCCTCTTCTCGATGACTCTGACTCGGTAATTAGGGAGATTGCAATAAATTTGCTCTTCCTTTTTTCACAACATGAGCCAGAGGGAGTAGTCAAGTACCTTCTGCAGCCGAGAAGGTTAGAGGCTTTGGTCAGGTTGTTAGAGAATGACAAGCCTGAAGTGCAGATTGCTTCTGCAGGCTTATTAGCCAACCTGCCAAAATCAGAGAAATCACTGACCATCAGGCTGATCGAATTGAACGGGCTCGATTCAATTATCAATATCTTGAAGTCCGGGACTGATGAAGCGAAAGAAAATGCTTTGAGTGCTCTCTTCAGGTTCACCGATCCTACGAATATCGAATCACAGCAAATGTTAGTCAAAAGAGGAGCTTACCCTTTGTTCGTAAACTGTCTATCTTCCGGTTCGTCTACAGCTAAGGCTAGAGCAGCAGCTCTGATTGGTGATCTTTCCACTAGTACTCCAAAGCTTAGCAAGTCAGGCAATTCAGCTGGTTGTTTATGCTTCAAATTTCAGAAGTCTGGTCTTCCTTATTGTATAGCACATTCTGGGATTTGTCATGTAAATACGACATTTTGTCTGGTGGAGGCAAATGCTTTGCCGGGTTTGGTCGATCTTTTGAAAGAAGAGGTTCATGCTACTGCCTTCGAGGCGATCCGGACTCTTTCCACACTCGCATTAACCTCTCCTTTGAGGGGATCTTTTGTTTTACACGATGCAAATGCCATAACTTTCACACTAAAGATTCTGAACTGGGGATCGGATTCTCTCAAAGTTGAGGCATTGGAGCTTTTGGAGAAGGTGTTTAGATCAAAGGATATGGTCGAATTCTATGGATCGAGAGCTAGACCGCTTCTTGCTGAGATGAGTAGCAGAAGTATTGTTAGAGACGACGATCAACTCCCCAGGAAAGCTGTGCGGGTACTAGCGCTCATCGAAAGATATTCAAAGTCATTTCAATTTGTTCATCCATGA 3027 43.51 MELVPIGTILVVLTKQVIKTATAAKDIVIEKESFKALSKHLFDIESVLKELQLQELNDSQAARQALESLESDVKQANNLVEKYRNRSRFYLLVRCRHIVNEVQQVTRKIGESLAALSLANNEVLSRISDQVTRIQNEMQRVEFQASHFQLQIVNKLTQGLQDQKMDQGFANNILEEIAKVVGVPVEPLEISKELTSLKKEKEEAECRKERAEALFLDQVIKVLSLADAARDYQEIMRQYFRRVRAIEHYETKEEYISPLNSFICQINGTVMVDPVSLCTNTTCERAAIQAWFESGKRTDPETGDFLEDTSLRPNFQLRQSIEEWQELNYCLKIRSSEAKLLSGEEHSVEEALILIQDLMRENSIYRDWITIGGLTDLLVVILGSSHNNDLKRKILITLKDVVEGHARNKETLIETQGWDHIISCLGSNSGTEKAAVELIDELLHDMSGWNLSACRKLAKQCNAINLLVIVLKGPERESAGIAERILMKLFHTDEVSISSAAMSGWYDPLVGQIVRGPESSALAMVKTLVNMDITDSNLKFLGEEGIVPPLLKMLSGNIESKELSLSALSKLSDVDSNKKLIAAAGGVPPILKLMFSSHMPSIIIVKCSHIIEKISSGEDAITLFVDGDGIQLEMESIVAGLLDLTPNLAYNIRRPALRALLGILKSDSELVKKAVLNASDLLLVLPLLDDSDSVIREIAINLLFLFSQHEPEGVVKYLLQPRRLEALVRLLENDKPEVQIASAGLLANLPKSEKSLTIRLIELNGLDSIINILKSGTDEAKENALSALFRFTDPTNIESQQMLVKRGAYPLFVNCLSSGSSTAKARAAALIGDLSTSTPKLSKSGNSAGCLCFKFQKSGLPYCIAHSGICHVNTTFCLVEANALPGLVDLLKEEVHATAFEAIRTLSTLALTSPLRGSFVLHDANAITFTLKILNWGSDSLKVEALELLEKVFRSKDMVEFYGSRARPLLAEMSSRSIVRDDDQLPRKAVRVLALIERYSKSFQFVHP 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1282231 1285524 + Bda000947.1 Bda13g00095 18226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00095 1008 Gene3D - 644 851 IPR011989 -
Bda13g00095 1008 Gene3D - 517 643 IPR011989 -
Bda13g00095 1008 Coils Coil 194 214 - -
Bda13g00095 1008 Pfam U-box domain 261 326 IPR003613 GO:0004842|GO:0016567
Bda13g00095 1008 Gene3D - 5 121 IPR036537 GO:0007166
Bda13g00095 1008 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1003 - -
Bda13g00095 1008 Coils Coil 59 86 - -
Bda13g00095 1008 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 545 586 IPR000225 GO:0005515
Bda13g00095 1008 Gene3D - 862 1004 IPR011989 -
Bda13g00095 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 322 IPR013083 -
Bda13g00095 1008 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Bda13g00095 1008 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 722 749 IPR000225 GO:0005515
Bda13g00095 1008 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Bda13g00095 1008 Coils Coil 124 144 - -
Bda13g00095 1008 SUPERFAMILY ARM repeat 193 836 IPR016024 -
Bda13g00095 1008 Gene3D - 323 505 IPR011989 -
Bda13g00095 1008 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1003 - -
Bda13g00095 1008 SUPERFAMILY RING/U-box 246 326 - -
Bda13g00095 1008 SMART arm_5 871 911 IPR000225 GO:0005515
Bda13g00095 1008 SMART arm_5 796 836 IPR000225 GO:0005515
Bda13g00095 1008 SMART arm_5 752 793 IPR000225 GO:0005515
Bda13g00095 1008 SMART arm_5 534 573 IPR000225 GO:0005515
Bda13g00095 1008 SMART arm_5 405 444 IPR000225 GO:0005515
Bda13g00095 1008 SMART arm_5 574 616 IPR000225 GO:0005515
Bda13g00095 1008 SMART arm_5 710 751 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00095 - - - qsu:111984141 1268.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00095 Bda-Chr13:1282231 Bda13g00397 Bda-Chr13:4944995 3.75E-96 dispersed
Bda13g00095 Bda-Chr13:1282231 Bda02g00859 Bda-Chr2:49047415 2.38E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g592 . . . . . Bpe14g01220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00598 . . Bda13g00095 . . Bma02g00814 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018110 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00095 Bda_Chr13 FPKM 3.556263 5.368431 7.893646 9.302093 1.805556 2.022018 1.389456 15.540007 18.17765