Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00105 ATGGCGACCTTGTCACATTCTGGATCCGGGAGATTGTATTCGTGGTGGTGGGACAGTCACAATAGCCCTAAAAATTCCAAATGGCTCCAAGAAAATCTCAAAGACATGGATGTGAAAGTAAAAGCCATGATCAAGCTCATTGAAGAAGATGCAGATTCTTTTGCGCGAAGGGCCGAAATGTACTACAAGAAAAGGCCAGAGCTCATGAAATTGGTCGAGGAAATTTACAGAGCTTACCGCGCATTAGCAGAGAGATACGATCATGCGACTGTGGAGCTTCGTCAAGCTCATCGGACGATGGCGGAAGCATTTCCAAACCAAGTCCCTTATGATCTGATTGATGATTCACCACCCTCGGAAACTTCTGCTTCTGGACCCCAAGAACCCCATTCTCCAGAAATACTGCATCCAATTCGCTCATTATGCGAACTCAGTGACTCGTCGACTAGCACAGATGGATCGGGCTATGGACTTAGCAAAAGGGGTCTAAGACAACTCGACGAAGATGCATTTTCTCAGTTATCGAGTCAGAACCAGAATCTCAAGCTTCGTGCCGAAACATCAGAAACAGAAATTCAAAATATCAAAGAAATGTTGACAAAAATAGAAGCAGAGAAAGAAGCTATTTTCGTCAAGTACCAGCAGGCCTTGGAAAAATTATCCGATCTGGAGAGGAAACTGGACGTTGCTCGGAAAGAAGCTGCAGGGCTTGATCATTGCGCAAACAAGGCTGAAATCGAGATGAAAATATTGAAGGAAGCTCTTTCTGGAATTGAAGAAGAAAGGGATGCAAGTTTTCTTCAGTATAATCAGTCGTTGGAGAGGATATCTACCCTTGAGAATTTACTCTCTCTTTCTCAGGAAGAGGCTAAAGCGCTTGATATGAGAGCTGGTAAAGCAAAAAATGAAACTCAATATCTCAGATTACAGCTTTCAAGTTTAGAGAGCGAAAAGGAAGACAATCTTCGTCAGTATAAACTATGTTTGGAGAAGATATCTCTTATGGAGGCTAAGATTTCTGCTGCTGAGGAAAATGCAGGAGTACTGAATGAACATATAGTAAGAGTAGAATCTGAAGTAAGTGCATTGAAGGAGACTATCAATGAGCTGAATAAAGAGAAAGAAACAGCATCTCTCCAGTACCAGGAGTGCTTAGACACGATGGCTACGATGGAGAGCGAAATTGCCCGTTTTCAAAATGACGCGAAACAACTAAATGGGGAACTTCTAACAGTCGCTAAAAAGTTGGACAGTGCAGAAGTAAAATGTTCTCAATTGGAGGAATCAAATCTAGCTCTGCGATTAGAGGCAGACAGCCTGATAAGGAAGATCACGATGAAGGATCAAGAACTTGCTCAAAGGCACGATGACCTCAAGAAATTCCAGATTCAAACCCAAGATGAGCAGTCTCGGTTTACGCAAGTTGAAACCACTCTTCACGCATTACAAAAATTGCATTCTCAATCTCAAGAGGAGCAGAGAGCTCTTTCATTGGAGCTTAAAAATGGTCTTCAGATGTTGAAGGAGTTGGGATCTCGCAAACTTAGTGTGGAGGAAGAACTTCAAAAGGTCAAGGAGGAAAATAGGAGCCTGAATGAATCAAATTTGTCTTCGAATATTTCGGCGAAGAATCTGGAGAGTGAAATTTTCAGCTTAAAGGTGGTAAAAGACAAACTCGAAGAAGAGGTATTCCGAAAAGCAGAATATAGCAACACCCTTGAGCAGGAAATTCATCTTTTAAGAGAGGAAATCAAGGGCATGAATGAAAGATACCAGGCCATAATGATGCAGGTTGAATCTGTAAAGGAATTGCAAAATGAGAATGCAAAGCTTAGAGACACCTGCGAGATCGAGCGTAACAAAGGAGAAGTTCTTTACGAGAAGTTGAATTCTATGGACAAAATGTCAAAAGATAATGCAGTTCTCGAGAAGTCTTTAGCGGAAATGAATGGTGAGTTGGAAAAGCTAAGGGAAAAGGCAAAGGACTTTCAGGAGTCGTGCCATTTTCTTCAGGGAGAAAAAACCACTCTTGTTGGTGAAAAGGCCACCTTGCTGTTACAGCTGCAGATCATTACTGAAAATATGCAGAAGCTCTTAGAGAAGAACACCTTACTGGAAAATTCCTTATGCGGTGCAAACACCGAACTTGAAGGTCTGAGGGGCCATTCAAAGAGCTTAGAAGAATTCTGCCAGTTGCTGAAGGGTGAAAAATCTACCATTCTCAGTGAAAGAGATGCCTTGGTATCTCAGTTGGAAAGCGTTGAACTGAGGCTGGGAAATCTTGAAAAGAGATTTTCAAATCTTGAAGAGAAGTATACTTCCTTGGAAAACGAAAACGAGGCAACGCTCAATCAAGTGGAAGAATTAAGATCTTCCCTTGTTTCCCAAAAAGAAGAGCATGCAAGTTATAGGACATTAAACGAGACGAAAGTGTCTGGCTTGGAAACCCATATTCATATCTTGCAAGACAACAGTAGAATGGGCAAGAGAGAATTTGAAGAAGAACTAGAGAAGGCTGTCAATGCTCAGGTAGAGATATTCATCCTCCAAAAGTTTGTGGAAGATTTGGAGGGGAAGAATTATTTGATGTTTACCGAATGTCAAAAGCTTAATGAGGCCACGAAATTGTCAAATAAACTGATCTCGGAGTTGGAGCGGGAAAATCTCGAGCAGCAGGTGGAAATAGAGTTCCTAGTGGATGAAATTGAAAATTTAAGAGGTGGAATTCATAGAGTGTTTAAGGCTCTTCAACTCAATCTTGAAAATGGGCACAAAGATAAGATCGAGAGAGAGAAACTTCCTCTGTTGAATATTTTGGACAAAGTTGAGGAATTAAAAACTTGTTTTCTCAGAAACAAGGATGAGATGCAGCAGCTGCTGGTTGAGAACTCAGTGCTCTTAACTTTGCTTGGGCAACAGAGATTAGAGGGACAAGAACTTCAGGCAGAGAAAAATTTTCTCGAAAACGAGTTTAAAATCCTGAAAGAAGAGTTCGCTATGAATGAGAAAGACAAACACGATCTGTTAGAGAAGACAAAGCAATTGACGTTTGAAATTACCGAGAAAGAGCAGCATGAGAAATTCTTGGCGGGTGGAATCCAAATCCAAAATCTCGAGTTGGAAAATTTGAAACTTGATTACCTTGCGTTACAGGAAGAAAATTCAGAAATGCTTAAAGTAAAGAGGTCTGAGCTACAGAAATTTTCGCAACTCAAAGAGGCAAATCATATTCTTGAAGAGGAACATAGAATAATCAGTGAAGAAGCTGTAGCACTGAGCATATTCTCGTTAGTCTGTGAAAGCTTCACTGCAGATAAAGCTGTAGAAATGAAAGCACTTAATGGAGATCTCAATCGTCACCATGTGGCCAATAGCGTGCTGAAGGAGGAGATCGAGGAGATGGCAGATATATTGGTAGCGAAGGAAACTGAAATTCTCCAATTGAACAAGTCCATTAAGAATTTGACGGAGGAGCTGCATGAAGTCAAAAACTCTAATGATGTTCTAACCCATGAAATCGTTACTGGAAATAATTTTGTCAGACAGAAAGTAGAAGAACTGTCACAAACAGAGCAAGAGCTGAAGGATGTGCAGGAATTAAACGTGAAATTGTACAATGAAGTTGAGGAACTGAAGATGGAATGTAAAGGATCGACTTTGCTTAGAGAAAATCTAGAAATTGAGAATCTTGAACTTTGCATGAATGCCCACAGTTTGAATGATGAAATCACTTGGCTCAATGAGATGAATGAAAATTTGAAATCTGAGATTGGCGTTTTGAGTAAGGAAGTTGAAGATTGCAGGATTAGAGAGGAAAATCTCAGTTCAGAGCTTCAGGAGAGAAGAAACGGGTTCGAACTATGGGATGCTGAAGCCGCTTCGTTCTATTTTGATCTTCAGATTTCGTCCATTCGAGAGGTCTTCCTCGAAAATAAGCTGCATGAACTTACTCAAGTTTGTGAGAAGCTTGGAGGTGAGAGTGCGGTGAAGGACATGGAGATTCAAAGTCTACGAGAAAGCATTATGTTCATGGAAAGTGAAATGGGAGGACAGAAGGCCAAGTTTTCCACATACTTGCCTGATAAGACTTCTTCGAAAGAGAATGTAGAAGTACTCGAGCACTATGTTCTTTCTCAAACTAAGCATTTCTCTGGTGGAATTCAAGAAGAAATGGATGATGAAAACACAGCTCTGTGCAACAAGATGGGAGCTAGGACTAAAGAATTTGAAGAGCTAGAGGAAAAATCAAAAGAAACTATGACCAACCAAGGAACTTTTAACACCCACGTTGAAGCAAGAGGTCCAATGAAACAGATGAAAGAGTTCATATCGGAGGGGGCCTCAGATCATGAAGTCACAAAGAGTGAACGGATGGAACTTCGGAATGGGTTCGATCAGATTTCAAAGCCATGTGCGAAAAGATCAGAAAATGGGACATTGATGAAAGACATCCCTCTTGATCAAGTCTCAGATTTTTCGTTCCACAGAAAAAGCAAAAGGGAGAATCGTGATTCGAAAGACCAAATGCTTCAATTATGGGAAACTGTGGAGAAGAACATCGGCCAGCATCAGACAGCCAATGAGATGCAGAAGCTGGCCATCATACCCCTCGAAACCGATCAGAAGATATTCGAGGAAAGAAAATATTCAGACTCGTCGGCAGAATTACAAATAGAGAAGGAATTGGGCGTTGACATGCTAGAGAGATCCTCAAGCATCAGAGAACGAAGTCAAGGAGGTAAAAAGAGAAAGATTCTACAGAGGCTTGCTTCAGATGCTCAGAAATTGACAAATATTCAATCTACAGTTCGTGATTTGAAGAAGAGACTGGAGAAGAAAAATTGGAGCAAGAAGGAAACCAGCACTGAATATGAGAAGGTTTGTAAACAGGTAAAAGAAGTTGAAGAGACTATCACTCAGCTGGTCACTGTGAATGATCAAATGACAAAGAACGTAGAACACAGCCCGTCATCTCTGGCCGGGAAAACTGCATCGGAGTTGGAGAGCGAAAATGTCGCTAGAAATAGCGTGATGGAAAGGGCACGAAAAGGGTCTGAAAAGATCGGAAGATTGCATTTTGAGGTGCAGAATATTCAGCTTATCTTGATAAAATTGGAAGAAGAGAAGAAAAGAAAGTGGAAGACAAGATTTTCCAAGAACAAAACAGGCATCATACTGAGGGACTTCATTTACAGTAGCAGGAAAAACAGTGAGAAGCAGCAGCAGAAGAAGAAGAACTGTTTCTGTGGGTGCAACAGAGGATCAACTGATGAAGACTGA 5280 41.02 MATLSHSGSGRLYSWWWDSHNSPKNSKWLQENLKDMDVKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEIYRAYRALAERYDHATVELRQAHRTMAEAFPNQVPYDLIDDSPPSETSASGPQEPHSPEILHPIRSLCELSDSSTSTDGSGYGLSKRGLRQLDEDAFSQLSSQNQNLKLRAETSETEIQNIKEMLTKIEAEKEAIFVKYQQALEKLSDLERKLDVARKEAAGLDHCANKAEIEMKILKEALSGIEEERDASFLQYNQSLERISTLENLLSLSQEEAKALDMRAGKAKNETQYLRLQLSSLESEKEDNLRQYKLCLEKISLMEAKISAAEENAGVLNEHIVRVESEVSALKETINELNKEKETASLQYQECLDTMATMESEIARFQNDAKQLNGELLTVAKKLDSAEVKCSQLEESNLALRLEADSLIRKITMKDQELAQRHDDLKKFQIQTQDEQSRFTQVETTLHALQKLHSQSQEEQRALSLELKNGLQMLKELGSRKLSVEEELQKVKEENRSLNESNLSSNISAKNLESEIFSLKVVKDKLEEEVFRKAEYSNTLEQEIHLLREEIKGMNERYQAIMMQVESVKELQNENAKLRDTCEIERNKGEVLYEKLNSMDKMSKDNAVLEKSLAEMNGELEKLREKAKDFQESCHFLQGEKTTLVGEKATLLLQLQIITENMQKLLEKNTLLENSLCGANTELEGLRGHSKSLEEFCQLLKGEKSTILSERDALVSQLESVELRLGNLEKRFSNLEEKYTSLENENEATLNQVEELRSSLVSQKEEHASYRTLNETKVSGLETHIHILQDNSRMGKREFEEELEKAVNAQVEIFILQKFVEDLEGKNYLMFTECQKLNEATKLSNKLISELERENLEQQVEIEFLVDEIENLRGGIHRVFKALQLNLENGHKDKIEREKLPLLNILDKVEELKTCFLRNKDEMQQLLVENSVLLTLLGQQRLEGQELQAEKNFLENEFKILKEEFAMNEKDKHDLLEKTKQLTFEITEKEQHEKFLAGGIQIQNLELENLKLDYLALQEENSEMLKVKRSELQKFSQLKEANHILEEEHRIISEEAVALSIFSLVCESFTADKAVEMKALNGDLNRHHVANSVLKEEIEEMADILVAKETEILQLNKSIKNLTEELHEVKNSNDVLTHEIVTGNNFVRQKVEELSQTEQELKDVQELNVKLYNEVEELKMECKGSTLLRENLEIENLELCMNAHSLNDEITWLNEMNENLKSEIGVLSKEVEDCRIREENLSSELQERRNGFELWDAEAASFYFDLQISSIREVFLENKLHELTQVCEKLGGESAVKDMEIQSLRESIMFMESEMGGQKAKFSTYLPDKTSSKENVEVLEHYVLSQTKHFSGGIQEEMDDENTALCNKMGARTKEFEELEEKSKETMTNQGTFNTHVEARGPMKQMKEFISEGASDHEVTKSERMELRNGFDQISKPCAKRSENGTLMKDIPLDQVSDFSFHRKSKRENRDSKDQMLQLWETVEKNIGQHQTANEMQKLAIIPLETDQKIFEERKYSDSSAELQIEKELGVDMLERSSSIRERSQGGKKRKILQRLASDAQKLTNIQSTVRDLKKRLEKKNWSKKETSTEYEKVCKQVKEVEETITQLVTVNDQMTKNVEHSPSSLAGKTASELESENVARNSVMERARKGSEKIGRLHFEVQNIQLILIKLEEEKKRKWKTRFSKNKTGIILRDFIYSSRKNSEKQQQKKKNCFCGCNRGSTDED 1759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1450061 1455505 - Bda000959.1 Bda13g00105 18236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00105 1759 Coils Coil 507 534 - -
Bda13g00105 1759 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 166 - -
Bda13g00105 1759 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 168 1759 - -
Bda13g00105 1759 Coils Coil 1177 1270 - -
Bda13g00105 1759 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Bda13g00105 1759 Coils Coil 171 233 - -
Bda13g00105 1759 Coils Coil 570 590 - -
Bda13g00105 1759 Coils Coil 416 443 - -
Bda13g00105 1759 Coils Coil 241 261 - -
Bda13g00105 1759 Coils Coil 867 901 - -
Bda13g00105 1759 Coils Coil 681 708 - -
Bda13g00105 1759 MobiDBLite consensus disorder prediction 108 133 - -
Bda13g00105 1759 Coils Coil 353 408 - -
Bda13g00105 1759 Coils Coil 1617 1637 - -
Bda13g00105 1759 PANTHER PROTEIN NETWORKED 4A 1 166 - -
Bda13g00105 1759 PANTHER PROTEIN NETWORKED 4A 168 1759 - -
Bda13g00105 1759 SUPERFAMILY Tropomyosin 173 417 - -
Bda13g00105 1759 Coils Coil 1033 1060 - -
Bda13g00105 1759 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Bda13g00105 1759 Coils Coil 632 673 - -
Bda13g00105 1759 Coils Coil 744 799 - -
Bda13g00105 1759 Coils Coil 542 562 - -
Bda13g00105 1759 Coils Coil 970 1004 - -
Bda13g00105 1759 Coils Coil 1138 1172 - -
Bda13g00105 1759 Gene3D - 626 811 - -
Bda13g00105 1759 Coils Coil 594 621 - -
Bda13g00105 1759 MobiDBLite consensus disorder prediction 1651 1671 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00105 - - - qsu:111998448 1725.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00592 Bda13g00105 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00542 Bda-Chr4:54110872 Bda13g00105 Bda-Chr13:1450061 1.13E-81 dispersed
Bda12g00010 Bda-Chr12:72564 Bda13g00105 Bda-Chr13:1450061 2.63E-48 dispersed
Bda03g00455 Bda-Chr3:3944785 Bda13g00105 Bda-Chr13:1450061 1.25E-25 transposed
Bda04g00120 Bda-Chr4:2735453 Bda13g00105 Bda-Chr13:1450061 9.90E-36 transposed
Bda04g00131 Bda-Chr4:3148749 Bda13g00105 Bda-Chr13:1450061 3.74E-35 transposed
Bda06g00834 Bda-Chr6:11581808 Bda13g00105 Bda-Chr13:1450061 3.81E-09 transposed
Bda14g01322 Bda-Chr14:14910879 Bda13g00105 Bda-Chr13:1450061 1.21E-37 transposed
Bda11g00592 Bda-Chr11:6043328 Bda13g00105 Bda-Chr13:1450061 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00105 Bda_Chr13 FPKM 3.862895 5.222602 5.886501 5.676519 11.705131 10.402746 10.805608 5.74543 5.153863