Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00106 ATGATATCACATCATGATGATAGCCATGCCTCCAGCAATAAGCAACTGCTCCGTTGTAAATCTGCTGGAAGTTCATCACACGTTTTGAATGGAATAGGTTTGCACTTGAATGCTCTAGCAACAGGTTCGAAGCGTTACCAAGATGTCAATCATGAAAATTTGTTGTACGGAAGACAACTAAGTTTGCCCAGCTCTACTGCACTAAATCCTCCCTCCACAGCAGAAGGTGAACCTCTCTTGGCTTCAGCTGTTTCAGAAAGAGATGCAGATCCTTCTGAAAATGAGGCTCAGATGGACGAAGATGCTTCTCATCCATCGGCTTATGTACTAGATGAAGATTTCAATCAAAATAGTCCCAAAAAGAAGAGGCGTAAGGAACAATCTGGAGAAAGTGAGGCGTGCAAACGTTGTAACTGTAAAAAGTCAAAGTGTTTGAAACTTTATTGCGAATGCTTTGCTGCTGGTGTATACTGCATTGAACCATGTTCTTGTCAAGAATGTTTTAATAAACCAATCCATGAAGATACGGTTCTTGCAACTCGGAAACAGATCGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTGATTAGAAACTCCGATTCTGTGCCTGAGCTCGGGGATGAATCCAGCAAAACCCCTGCTTCAGCTCGACATAAAAGAGGATGCAACTGCAAAAAATCAAGCTGTCTGAAGAAATACTGCGAGTGCTATCAGGGTGGTGTTGGATGTTCCATTAGTTGTAGATGTGAAGGGTGTAAAAATGCATTTGGTAGAAAGGACGGTTCTGTTTCAATCGAATTAGAAACCGAGCAAGAGGAAGAAGAAATGGAAGCTGGTGTGAAGAGTGTGGTGAAGAAACCTTCACCTCTGGGAACTGAAATACAGAATAATGAAGAGCAGAATCCTGGTTCTCTTCTTCCCACAACACCATTACAGCTCTGCAGGCCAATAGTTCCACTGACTTTCTCCTCGAAGACGAAAATAGGATCTTCATTTCTCATCGCCGGATCTTCTTCCGGGTTATACACCGGCCAAAAACTCGTTGAAAAGCTAAACATTCTTCGACCTCAACCCAAGTTCGATAGACAAATGAAAACCGTATCGGAAGATGAGATGCCGGAGATTCTTCGAGTAGATAGTTGTCCAAGCACTATTGTGAAGACCAGTTCCCCCAATAGTAAGCGAGTCTCTCCACCTCAGAGCGAGTTTGGATCGTCAGCCTCTTCCAAGAACTGGCCGGAAGTTGATCTTACAATCCATCCCTTCTTTTCCTTCCCTCACTCCCCAGCACTGAAAAGTGACAGCATTATACTCTTTAAATTACAAGCAAAGTTGGAAGAGTATGTTGTTTAG 1356 43.07 MISHHDDSHASSNKQLLRCKSAGSSSHVLNGIGLHLNALATGSKRYQDVNHENLLYGRQLSLPSSTALNPPSTAEGEPLLASAVSERDADPSENEAQMDEDASHPSAYVLDEDFNQNSPKKKRRKEQSGESEACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLATRKQIESRNPLAFAPKVIRNSDSVPELGDESSKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSVSIELETEQEEEEMEAGVKSVVKKPSPLGTEIQNNEEQNPGSLLPTTPLQLCRPIVPLTFSSKTKIGSSFLIAGSSSGLYTGQKLVEKLNILRPQPKFDRQMKTVSEDEMPEILRVDSCPSTIVKTSSPNSKRVSPPQSEFGSSASSKNWPEVDLTIHPFFSFPHSPALKSDSIILFKLQAKLEEYVV 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1467741 1469680 - Bda000960.1 Bda13g00106 18237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00106 451 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 135 170 IPR005172 -
Bda13g00106 451 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 220 256 IPR005172 -
Bda13g00106 451 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 4 409 IPR044522 GO:0003700
Bda13g00106 451 SMART CXC_2 218 259 IPR033467 -
Bda13g00106 451 SMART CXC_2 132 173 IPR033467 -
Bda13g00106 451 MobiDBLite consensus disorder prediction 387 411 - -
Bda13g00106 451 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 4 409 - -
Bda13g00106 451 MobiDBLite consensus disorder prediction 83 127 - -
Bda13g00106 451 ProSiteProfiles CRC domain profile. 133 258 IPR005172 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00875 Bda13g00106 CCT
Bda03g00875 Bda13g00106 ECH
Bda11g00591 Bda13g00106 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02058 Bda-Chr1:56823876 Bda13g00106 Bda-Chr13:1467741 1.14E-30 dispersed
Bda11g01097 Bda-Chr11:10752029 Bda13g00106 Bda-Chr13:1467741 4.02E-28 dispersed
Bda05g00544 Bda-Chr5:53146525 Bda13g00106 Bda-Chr13:1467741 2.04E-08 transposed
Bda06g01170 Bda-Chr6:41136157 Bda13g00106 Bda-Chr13:1467741 4.36E-28 transposed
Bda11g00591 Bda-Chr11:6035569 Bda13g00106 Bda-Chr13:1467741 0 wgd
Bda13g00106 Bda-Chr13:1467741 Bda03g00875 Bda-Chr3:7585006 1.46E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16841 PF03638 TCR 9.80E-12 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00106 - - qsu:112021049 543.502