Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00106 ATGATATCACATCATGATGATAGCCATGCCTCCAGCAATAAGCAACTGCTCCGTTGTAAATCTGCTGGAAGTTCATCACACGTTTTGAATGGAATAGGTTTGCACTTGAATGCTCTAGCAACAGGTTCGAAGCGTTACCAAGATGTCAATCATGAAAATTTGTTGTACGGAAGACAACTAAGTTTGCCCAGCTCTACTGCACTAAATCCTCCCTCCACAGCAGAAGGTGAACCTCTCTTGGCTTCAGCTGTTTCAGAAAGAGATGCAGATCCTTCTGAAAATGAGGCTCAGATGGACGAAGATGCTTCTCATCCATCGGCTTATGTACTAGATGAAGATTTCAATCAAAATAGTCCCAAAAAGAAGAGGCGTAAGGAACAATCTGGAGAAAGTGAGGCGTGCAAACGTTGTAACTGTAAAAAGTCAAAGTGTTTGAAACTTTATTGCGAATGCTTTGCTGCTGGTGTATACTGCATTGAACCATGTTCTTGTCAAGAATGTTTTAATAAACCAATCCATGAAGATACGGTTCTTGCAACTCGGAAACAGATCGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTGATTAGAAACTCCGATTCTGTGCCTGAGCTCGGGGATGAATCCAGCAAAACCCCTGCTTCAGCTCGACATAAAAGAGGATGCAACTGCAAAAAATCAAGCTGTCTGAAGAAATACTGCGAGTGCTATCAGGGTGGTGTTGGATGTTCCATTAGTTGTAGATGTGAAGGGTGTAAAAATGCATTTGGTAGAAAGGACGGTTCTGTTTCAATCGAATTAGAAACCGAGCAAGAGGAAGAAGAAATGGAAGCTGGTGTGAAGAGTGTGGTGAAGAAACCTTCACCTCTGGGAACTGAAATACAGAATAATGAAGAGCAGAATCCTGGTTCTCTTCTTCCCACAACACCATTACAGCTCTGCAGGCCAATAGTTCCACTGACTTTCTCCTCGAAGACGAAAATAGGATCTTCATTTCTCATCGCCGGATCTTCTTCCGGGTTATACACCGGCCAAAAACTCGTTGAAAAGCTAAACATTCTTCGACCTCAACCCAAGTTCGATAGACAAATGAAAACCGTATCGGAAGATGAGATGCCGGAGATTCTTCGAGTAGATAGTTGTCCAAGCACTATTGTGAAGACCAGTTCCCCCAATAGTAAGCGAGTCTCTCCACCTCAGAGCGAGTTTGGATCGTCAGCCTCTTCCAAGAACTGGCCGGAAGTTGATCTTACAATCCATCCCTTCTTTTCCTTCCCTCACTCCCCAGCACTGAAAAGTGACAGCATTATACTCTTTAAATTACAAGCAAAGTTGGAAGAGTATGTTGTTTAG 1356 43.07 MISHHDDSHASSNKQLLRCKSAGSSSHVLNGIGLHLNALATGSKRYQDVNHENLLYGRQLSLPSSTALNPPSTAEGEPLLASAVSERDADPSENEAQMDEDASHPSAYVLDEDFNQNSPKKKRRKEQSGESEACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLATRKQIESRNPLAFAPKVIRNSDSVPELGDESSKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSVSIELETEQEEEEMEAGVKSVVKKPSPLGTEIQNNEEQNPGSLLPTTPLQLCRPIVPLTFSSKTKIGSSFLIAGSSSGLYTGQKLVEKLNILRPQPKFDRQMKTVSEDEMPEILRVDSCPSTIVKTSSPNSKRVSPPQSEFGSSASSKNWPEVDLTIHPFFSFPHSPALKSDSIILFKLQAKLEEYVV 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1467741 1469680 - Bda000960.1 Bda13g00106 18237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00106 451 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 135 170 IPR005172 -
Bda13g00106 451 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 220 256 IPR005172 -
Bda13g00106 451 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 4 409 IPR044522 GO:0003700
Bda13g00106 451 SMART CXC_2 218 259 IPR033467 -
Bda13g00106 451 SMART CXC_2 132 173 IPR033467 -
Bda13g00106 451 MobiDBLite consensus disorder prediction 387 411 - -
Bda13g00106 451 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 4 409 - -
Bda13g00106 451 MobiDBLite consensus disorder prediction 83 127 - -
Bda13g00106 451 ProSiteProfiles CRC domain profile. 133 258 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00106 - - - qsu:112021049 543.502
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00875 Bda13g00106 CCT
Bda03g00875 Bda13g00106 ECH
Bda11g00591 Bda13g00106 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02058 Bda-Chr1:56823876 Bda13g00106 Bda-Chr13:1467741 1.14E-30 dispersed
Bda11g01097 Bda-Chr11:10752029 Bda13g00106 Bda-Chr13:1467741 4.02E-28 dispersed
Bda05g00544 Bda-Chr5:53146525 Bda13g00106 Bda-Chr13:1467741 2.04E-08 transposed
Bda06g01170 Bda-Chr6:41136157 Bda13g00106 Bda-Chr13:1467741 4.36E-28 transposed
Bda11g00591 Bda-Chr11:6035569 Bda13g00106 Bda-Chr13:1467741 0 wgd
Bda13g00106 Bda-Chr13:1467741 Bda03g00875 Bda-Chr3:7585006 1.46E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g00106 BCT,CCT,ECH 24 406 CPP Transcription Factor Family AT3G22780 51.6 1.4e-88 324.3
Bda13g00106 BCT,CCT,ECH 7 409 CPP Transcription Factor Family AT4G14770 52.4 2.2e-91 333.6
Bda11g01097 BCT 97 515 CPP Transcription Factor Family AT2G20110 59.3 9.3e-128 454.1
Bda01g02058 BCT 6 401 CPP Transcription Factor Family AT2G20110 55.8 1.9e-112 403.3
Bda13g00106 BCT,CCT,ECH 105 258 CPP Transcription Factor Family AT3G04850 63.2 6.1e-54 209.1
Bda01g02058 BCT 85 361 CPP Transcription Factor Family AT5G25790 50.3 1.0e-74 277.7
Bda11g01097 BCT 102 521 CPP Transcription Factor Family AT4G29000 61.5 2.4e-140 496.1
Bda01g02058 BCT 28 391 CPP Transcription Factor Family AT4G29000 59.3 1.6e-120 430.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003693 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 7 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16841 PF03638 TCR 9.80E-12 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00106 Bda_Chr13 FPKM 0.296804 0.007968 0.063639 1.37109 1.975315 1.291402 1.440861 0.0 0.086755