Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00107 ATGGATTCTAAAGCAGGTGAATATGATGATAAGAAATTGGGGTGCTTGGAAGAAAACACACCTTTGGTGAAGGGTATGGGAAGTGTTAGTAGCAAGGATATGATTTTCAGAGCAGATAAGATCGACTTGAAAAATTTGGATATGCAGCTAGAGAAGCATTTGAGCCGTGTTTGGACGAGAAACGCAGAGAGTTATAGGCCGAAAGAGGAATGGGAAATTGATTTGTCAAAACTGGATATTAGATACGTTGTTGCTCATGGAACTTATGGGACTGTTTACAGGGGTACATATGATACTCAAGATGTTGCAGTGAAACTGCTGGACTGGGGGGAGGACGGGATTGCTACAGCTTTTGTTGGGGCTTCGATGGGAACATCAAATCTTAAGGTTCCTTCAAAGAACACTTCAACTGATGTCGAAAGTTCATTTCCTTCCAGAGCATGTTGTGTTGTCGTGGAGTATCAAGCCGGTGGAACGTTGAAACAGTTTTTGATCAGAAATAGACAGAAGAAGCTCACCTTTAAGGTCGTGGTTCAACTTGCATTGGATCTGTCTAGAGGTCTTAGTTATCTTCATTCAAAGAAGATTGTACATCGTGATGTCAAAACGGAAAATATGTTGCTAGACGGCCAGAGAACCTTAAAAATTGCAGATTTTGGAGTTGCTCGTGTGGAAGCTCAAAATCCGAGAGACATGACAGGGGAAACTGGTACCCTTGGATACATGGCTCCTGAGTCAATTTGTAGGGAACATGCATTTTCAACTATGGGACTGTGTTCTTCTGTGAACTGGCAATGTGGCCAGCTAGCTGGTATTGGGCTGCTGAAATGTGTAAATGAGAGTAAAAAAGGAATGAAAAATAGAGTAATTTGTTTTTTTACAGTTTGGGTGCTAGCTACACATTGTGAGATAAATAATGTTATCTACGCGCTATTTGATCTCATTTATCTTTCGATCTGCATTCGTCTTTGTTGGCAGAATCTACGACCAGAAATCCCAAGATGTTGTCCAAGTGGTTTAGCAAATATCATGAGAAAATGCTGGGATGCAAATGCAGACAAGCGCCCTGAAATGGCCGATGTTGTGGGAATGTTGGAAGCAATAGACACAAGTAAAGGAGGAGGAATGATTCCGGAAGATCAGGCGATTGGCTGTTTATGTTTCGCCCCTGCACGCGGACCTTAA 1185 42.03 MDSKAGEYDDKKLGCLEENTPLVKGMGSVSSKDMIFRADKIDLKNLDMQLEKHLSRVWTRNAESYRPKEEWEIDLSKLDIRYVVAHGTYGTVYRGTYDTQDVAVKLLDWGEDGIATAFVGASMGTSNLKVPSKNTSTDVESSFPSRACCVVVEYQAGGTLKQFLIRNRQKKLTFKVVVQLALDLSRGLSYLHSKKIVHRDVKTENMLLDGQRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPESICREHAFSTMGLCSSVNWQCGQLAGIGLLKCVNESKKGMKNRVICFFTVWVLATHCEINNVIYALFDLIYLSICIRLCWQNLRPEIPRCCPSGLANIMRKCWDANADKRPEMADVVGMLEAIDTSKGGGMIPEDQAIGCLCFAPARGP 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1484747 1486820 + Bda000961.1 Bda13g00107 18238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00107 394 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 116 247 - -
Bda13g00107 394 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 23 117 - -
Bda13g00107 394 ProSiteProfiles Protein kinase domain profile. 78 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00107 394 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 116 247 - -
Bda13g00107 394 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 23 117 - -
Bda13g00107 394 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 310 387 - -
Bda13g00107 394 Gene3D Transferase(Phosphotransferase) domain 1 293 373 - -
Bda13g00107 394 Gene3D Transferase(Phosphotransferase) domain 1 139 264 - -
Bda13g00107 394 Pfam Protein tyrosine and serine/threonine kinase 325 364 IPR001245 GO:0004672|GO:0006468
Bda13g00107 394 Pfam Protein tyrosine and serine/threonine kinase 82 251 IPR001245 GO:0004672|GO:0006468
Bda13g00107 394 SMART serkin_6 78 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda13g00107 394 SUPERFAMILY Protein kinase-like (PK-like) 59 367 IPR011009 -
Bda13g00107 394 Gene3D Phosphorylase Kinase; domain 1 67 124 - -
Bda13g00107 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Bda13g00107 394 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 310 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00544 Bda-Chr4:54136935 Bda13g00107 Bda-Chr13:1484747 7.46E-160 dispersed
Bda13g00107 Bda-Chr13:1484747 Bda09g01013 Bda-Chr9:40133049 9.37E-47 dispersed
Bda13g00107 Bda-Chr13:1484747 Bda13g01658 Bda-Chr13:40027030 1.55E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69987 PF07714 PK_Tyr_Ser-Thr 1.00E-29 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00107 - - jre:108989477 490.345