Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00108 ATGGCGTCGTCTTTTATTCGTCGAAAATTGTGCTCTCCTGGTGTTTCTCGGATTCGTTGTGGTGAAATGAAGACATTTAATGTGCCTTTGGGATTCAACTTGAGACCTTTAATTTGGGTTTCTGAAATTGTAAGGCATTGCAGTATCTTCAGTGATGCCAGAAAATTTGAATTTACTGATTTAACGCGTCCTCATACTTGGTATCCTAACGCTAGAAAAAAACAAAGAAAAGTTGTTCTGCACATGGGTCCCACCAATAGTGGCAAAACATATCAGGCTTTGAAGAAGCTCGAGTTGAGTTCTTCTGGCATATATTGTGGTCCTTTGAGATTGTTGGCTTGGGAGGTAGCGAAGCGGTTGAACAAGGCAAAAGTACCATGTGATTTAATTACAGGACAAGAAAGAGAGGAAGTTGAAGGCGCAAAACACAAGGCTGTGACAGTTGAGATGGCTGATGTAACTTCTGACTATAGTTGTGCTGTTATAGACGAAATTCAGATGTTGGGATGTAGGACTAGGGGTTTCTCATTTACACGGGCCCTACTAGGACTTTCTGCTGACGAGCTTCACCTTTGTGGAGATGCTGCTGTCATACCTCTCATTCAGGATATACTAAAAGTTACTGGTGATGATGTTGAGGTTCATTACTATGATAGACTTTCACCTCTAATTCCACAAGAGGTTCCTCTTGGATCCTGGTCAAATATAACAACGGGTGATTGCATTGTAACTTTTTCTCGTCGCCAGATTTATAAGTATAAGAAAAAAATTGAAAGTGTGGGAAAGCATTTATGCTCTGTAGTTTACGGTTCTCTACCTCCTGAAACTCGAACAAGACAGGCTGTAATGTTTAATGATGAAACTAGTGAGTTTGATGTTCTTGTGGCCAGTGATGCCATTGGGATGGGTCTTAATCTAAATATCTCCAGGATCATATTTTCAACAATGCAGAAGTTTGATGGTATGGAGATGCGAGATCTTACTGTATCAGAGATCAAACAGATTGCAGGCAGAGCTGGAAGATATGGATCTAAGTTTCCTGTTGGTCAAGTAACTTGTATGGATAGGGAGGATCTGCCTCTACTTCAGTCATCACTCAAATCGTCTTCTCCTTTCATTGAGGGTGCTGGATTATTCCCAACCTTTGAGCTCATGTTTCTTTATTCACGTTTACACCCAGAAAATGGTCTGCATCAGATACTGGAGTACTTTGTTGAGAACTCCAAAGTGTCTGCAAATTATTTCATTGCTAATTGTGAGGAGATGTTGAAAGTTGCTGCTATTGTTGACGAGTTTCCTCTCAGGTTGCATGAAAAATATATTTTCTGCATCAGTCCAGTGGATTTGGATGATGATATCACATCTCAAGGTTTTATCCAGTTTGCTCAAACTTATGCAAAAAAGGGCATTGTTCGGCTACTGGAGATATTTACTCCTGGTACCCTTCAGGTGCCAAAAACACAAGATGGATTGAAGGAGCTTGAATCTATTCACAAGGTTTTGGATCTATATGTTTGGTTGAGTTTCCGGCTGGAGGAATCGTTCCCAGACCGTGATCTTGCATCGACACAGAAGGCCATTTGCAGCCTATTAATAGAAGAGTTTTTGGAAAGAATGGGGTGGCAAAACCCAGGGGCAAGGAAGTTGTCAACCCGAACAGGATTAAGCCCGAGGCCTGCACTATCCCACCACATCAGGCCTTACCTTTGA 1710 41.46 MASSFIRRKLCSPGVSRIRCGEMKTFNVPLGFNLRPLIWVSEIVRHCSIFSDARKFEFTDLTRPHTWYPNARKKQRKVVLHMGPTNSGKTYQALKKLELSSSGIYCGPLRLLAWEVAKRLNKAKVPCDLITGQEREEVEGAKHKAVTVEMADVTSDYSCAVIDEIQMLGCRTRGFSFTRALLGLSADELHLCGDAAVIPLIQDILKVTGDDVEVHYYDRLSPLIPQEVPLGSWSNITTGDCIVTFSRRQIYKYKKKIESVGKHLCSVVYGSLPPETRTRQAVMFNDETSEFDVLVASDAIGMGLNLNISRIIFSTMQKFDGMEMRDLTVSEIKQIAGRAGRYGSKFPVGQVTCMDREDLPLLQSSLKSSSPFIEGAGLFPTFELMFLYSRLHPENGLHQILEYFVENSKVSANYFIANCEEMLKVAAIVDEFPLRLHEKYIFCISPVDLDDDITSQGFIQFAQTYAKKGIVRLLEIFTPGTLQVPKTQDGLKELESIHKVLDLYVWLSFRLEESFPDRDLASTQKAICSLLIEEFLERMGWQNPGARKLSTRTGLSPRPALSHHIRPYL 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1487913 1497656 - Bda000962.1 Bda13g00108 18239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00108 569 Pfam Helicase conserved C-terminal domain 242 343 IPR001650 -
Bda13g00108 569 Gene3D - 64 218 IPR027417 -
Bda13g00108 569 SMART helicmild6 255 343 IPR001650 -
Bda13g00108 569 MobiDBLite consensus disorder prediction 548 569 - -
Bda13g00108 569 CDD SF2_C_suv3 221 355 - -
Bda13g00108 569 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 386 IPR001650 -
Bda13g00108 569 Pfam Suv3 C-terminal domain 1 425 466 IPR041082 -
Bda13g00108 569 Gene3D - 58 443 - -
Bda13g00108 569 Gene3D - 445 549 - -
Bda13g00108 569 Gene3D - 219 370 IPR027417 -
Bda13g00108 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 345 IPR027417 -
Bda13g00108 569 PANTHER ATP-DEPENDENT RNA HELICASE SUPV3L1, MITOCHONDRIAL 52 545 - -
Bda13g00108 569 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 52 545 - -
Bda13g00108 569 CDD DEXQc_Suv3 76 217 IPR044774 GO:0003724|GO:0005524
Bda13g00108 569 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 186 IPR014001 -
Bda13g00108 569 Pfam Mitochondrial degradasome RNA helicase subunit C terminal 491 538 IPR022192 GO:0016817
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00108 K17675 SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:3.6.4.13] - jre:108989490 866.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00108 Bda-Chr13:1487913 Bda13g01685 Bda-Chr13:40224880 1.44E-127 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g532 . . . . . Bpe14g01202 . . . . . Cma14g01728 . Car14g01559 . . Cpe03g01451 Bhi01g00784 . . . Hepe05g1572 . Lcy11g1567 . . . . . . . Cone14ag0866 . . . Lsi05g01623 . . Cme06g00591 Blo02g00530 . . Bda13g00108 . . Bma02g00831 . . . Cmo14g01767 . . . . . . . . . . . . . Cla05g00523 Cam05g0576 Cec05g0586 Cco05g0584 Clacu05g0572 Cmu05g0542 Cre05g0611 . Csa03g01305 Chy06g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008560 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00108 Bda_Chr13 FPKM 2.103761 4.006073 4.649769 4.286621 4.180744 2.421003 3.917692 5.716448 4.580764