Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00111 ATGGAGCACTTGCGAATGATGAAGTCGACTCTGATCTTCGCTCTCCTGGCGGCTATGCTCTGGGCAAGAGCCGAGTCACAGTCATGTACCAACGTGATAATCACTTTGTCTCCGTGCTTAAACTACATTACAGGAAACTCTTCAACCCCATCTTCAGGATGCTGTTCACAGCTTGCAAGCGTTGTCCGTTCACAGCCTCAGTGCTTATGCCAGGTCCTCAACGGTGGAGGTTCCTCGCTCGGGCTCAATATCAACCAAACTCAGGCTCTGGCTCTACCTTCTGCTTGCAATGTTCAGACTCCGTCAATTAGTAGCTGCAATGCTGCATCTCCTGCCAACTCTCCAGCCGAGACACCTGAATCGTCAATCACAGATCCTTCAGCAGGCGATGGATCCAAATCTGTGCCTTCTACACCACAAGGAACATCAAATGGAAATTCACTGCACTTGTCAAAATCTCTGCTCTTCTTAATTCTTTCAGTCACCACTTTGGTCTCATTTGTCATGGAGCATTGA 516 48.45 MEHLRMMKSTLIFALLAAMLWARAESQSCTNVIITLSPCLNYITGNSSTPSSGCCSQLASVVRSQPQCLCQVLNGGGSSLGLNINQTQALALPSACNVQTPSISSCNAASPANSPAETPESSITDPSAGDGSKSVPSTPQGTSNGNSLHLSKSLLFLILSVTTLVSFVMEH 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1515515 1516292 + Bda000965.1 Bda13g00111 18242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00111 171 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 11 163 IPR043325 -
Bda13g00111 171 CDD AAI_LTSS 36 98 - -
Bda13g00111 171 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 107 IPR036312 -
Bda13g00111 171 PANTHER - 11 163 - -
Bda13g00111 171 Pfam Probable lipid transfer 17 106 IPR016140 -
Bda13g00111 171 MobiDBLite consensus disorder prediction 108 144 - -
Bda13g00111 171 SMART aai_6 29 106 IPR016140 -
Bda13g00111 171 Gene3D - 26 117 IPR036312 -
Bda13g00111 171 PRINTS Plant phospholipid transfer protein signature 83 100 IPR000528 GO:0006869|GO:0008289
Bda13g00111 171 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Bda13g00111 171 PRINTS Plant phospholipid transfer protein signature 49 63 IPR000528 GO:0006869|GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00111 - - - jre:109005794 192.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00584 Bda13g00111 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01103 Bda-Chr6:39205678 Bda13g00111 Bda-Chr13:1515515 1.33E-17 dispersed
Bda10g00946 Bda-Chr10:43771317 Bda13g00111 Bda-Chr13:1515515 4.94E-11 dispersed
Bda11g00584 Bda-Chr11:5987861 Bda13g00111 Bda-Chr13:1515515 5.91E-53 dispersed
Bda13g00111 Bda-Chr13:1515515 Bda13g01907 Bda-Chr13:43428114 1.06E-07 dispersed
Bda13g00110 Bda-Chr13:1513991 Bda13g00111 Bda-Chr13:1515515 3.55E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00111 Bda_Chr13 FPKM 7.733837 9.382952 14.367057 13.6142 49.282642 49.783062 56.02676 12.072873 12.877166