Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00114 ATGGATGGAGACTCTTACAAATCAGAAGAAATTCAAGTCCCCGGTGAGGAGTCACCGGAGATTACCCTGAGACCATTGGGTCTCTCCGATATCGACGACTTCATGGTGTGGGCCACAGATGAGAGAGTGAGTCGACTCTGCGTGTGGGAACCATACAAAAGCAAAGAAGACGGCGAAAAGTACATAAAAGAAACGGTCGGACCCCACCCATGGTTCAGGGCGATTTGCGTCGACGACAGGGCGGTGGGGATGATTTCAGTGACGCCGAATTCGGGGATGGAGAAGTGCAGAGGACAGATAGGGTATGCACTGGGCTACAAGTGGTGGGGAAAGGGAATAGTGACGAAGGCGGTGAAGGCGGTGTCGAAGAGCGTATTTGAGGAATGGCCGCACCTGGAGAGGCTGGAAGCTTTTACCGACGTTGAAAATTGGGGGTCGCAGAGAGTGCTGGAGAAGGCTGGATTTCGAAGGGAAGGAGTTCTGAGAAAGTACGTTGTGCTCAAGGGAAGAACCTGGGATTTGGTCATTTTCAGCCTTCTTTCTTCTGATCTTCTTCGATAG 561 51.69 MDGDSYKSEEIQVPGEESPEITLRPLGLSDIDDFMVWATDERVSRLCVWEPYKSKEDGEKYIKETVGPHPWFRAICVDDRAVGMISVTPNSGMEKCRGQIGYALGYKWWGKGIVTKAVKAVSKSVFEEWPHLERLEAFTDVENWGSQRVLEKAGFRREGVLRKYVVLKGRTWDLVIFSLLSSDLLR 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1541993 1542553 + Bda000969.1 Bda13g00114 18245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00114 186 Pfam Acetyltransferase (GNAT) domain 21 156 IPR000182 GO:0016407
Bda13g00114 186 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 20 183 - -
Bda13g00114 186 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 20 183 - -
Bda13g00114 186 Gene3D - 17 186 - -
Bda13g00114 186 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 21 173 IPR000182 GO:0016407
Bda13g00114 186 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 17 180 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00114 - - - zju:107407757 254.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01218 Bda-Chr7:14665484 Bda13g00114 Bda-Chr13:1541993 1.09E-52 dispersed
Bda13g00114 Bda-Chr13:1541993 Bda13g01027 Bda-Chr13:12012195 8.49E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g523 . . . . . . . . . . . . . . Sed02g1304 . Cpe03g01443 Bhi01g00794 Tan10g0825 Cmetu02g2090 . Hepe05g1562 . Lcy11g1556 . . . . . . . . . . . . . . Cme06g00599 . . . Bda13g00114 . . . . . . Cmo14g01759 . . . . . . . . . . . . . Cla05g00532 Cam05g0583 Cec05g0593 Cco05g0591 Clacu05g0580 Cmu05g0550 Cre05g0619 . Csa03g01315 Chy06g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006036 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 5 1 2 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16842 PF13302 Acetyltransf_3 3.90E-23 CL0257 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00114 Bda_Chr13 FPKM 0.0 0.0 0.0 0.0 0.460479 1.010386 1.606843 0.0 0.438963