Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00116 GCTGCTACTAATCTTGGTTATTGGGGATTTTTGAGGTCCATAACTTCATCTGCTGATCATATTCTTGCACTGGATGGAACTCTGATACAGAAGGAGCTGAAAAATATAATGGTCACAAGGTTGGGGAATACTACCAAGACAAAGCAGTACCTGTCCAGGCATTTCTATTTGGAAAGAGTTTTTGATGATTCTACCTCTAATCAGCCGAAACTAAGATGGCGGCAGCGAAACTTTTATTGCGATGGTGGTGCATTTGATCCAAGGACAAATGTCAATGACTCTGACAGTAAATTGGGCAGTAATTCCAACTTCCCCGCCACCATCCAGAATGACAATGACAGTACAAGAACTGATTTTGACTCCAAGCAAACTTTTGTAAGTATATGTATCCCGACCGACATGGCACCCCCAAGAGCAATTATCAGTAATGGAGGTTTACATTTTTGTAATAAATCATTAACAAATCTTCTTACTCAGTATGGAGTGAATCATAAAGTGGCACTTGGATACCATTCGCAAACAAATGGACAAACAGAAGTTTCCAATCTCAAGATAAAAAAGCTCTTCCTTGGTAAACTTAAATCACGGTGGTCTTGCCTATTTTCAATTGAGAAAGTTTTCCCTCATTGA 630 39.37 AATNLGYWGFLRSITSSADHILALDGTLIQKELKNIMVTRLGNTTKTKQYLSRHFYLERVFDDSTSNQPKLRWRQRNFYCDGGAFDPRTNVNDSDSKLGSNSNFPATIQNDNDSTRTDFDSKQTFVSICIPTDMAPPRAIISNGGLHFCNKSLTNLLTQYGVNHKVALGYHSQTNGQTEVSNLKIKKLFLGKLKSRWSCLFSIEKVFPH 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1555154 1564347 + Bda000972.1 Bda13g00116 18247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00116 209 PANTHER EXPRESSED PROTEIN 2 127 - -
Bda13g00116 209 SUPERFAMILY Ribonuclease H-like 131 193 IPR012337 -
Bda13g00116 209 Gene3D - 105 205 IPR036397 GO:0003676
Bda13g00116 209 MobiDBLite consensus disorder prediction 90 116 - -
Bda13g00116 209 ProSiteProfiles Integrase catalytic domain profile. 65 209 IPR001584 GO:0015074
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00116 - - - mcha:111009363 118.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00116 Bda-Chr13:1555154 Bda04g00344 Bda-Chr4:48691412 1.62E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g517 . . . . . Bpe14g01192 . . . . . Cma14g01713 . Car14g01548 Sed12g0935 . Cpe03g01440 Bhi01g00800 Tan10g0834 Cmetu06g1819 . . . . . . . . . . . . . Cone7ag0260 Cone4ag0249 Lsi05g01610 . . Cme06g00603 . . . Bda13g00116 . . Bma02g00837 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01323 Chy06g00574 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007217 1 2 0 2 1 1 1 1 1 1 1 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 4 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00116 Bda_Chr13 FPKM 85.078674 82.864273 18.661554 18.159122 1.233507 1.842871 1.552399 4.039326 3.160003