Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00139 ATGAAGATATTTGCCACTGCCTTACAAGGCAGTATTTTGAGGTCTCTCAACCTCTCGAACAATGCATTGGGTGAGAAGGGTGTTAGAGCATTCGGGGCGCTGCTGAAATCGCAAAACTGTTTAGAAGAACTCTATTTGATCAATGGCGGAATCTCTGAAGAAGCTGCAAGAGCAGTTGCCGAGCTGATTCCCTCGACGGAGAAACTTAAAATACTTCATTTCCATAATAACATGACCAGCGATGAAGGAGCAATTGCTATTTCTGAAGTTGTAAAGCAATCTCCTTTATTGGAGAATTTTCGCTGCTCTTCTACGAGGATAGGCTCCGAAGGCGGGATTGCCTTATCTATTGCACTCGGAACGTTTACCAGTTTGAGGAAGCTCGATCTGACAGACAACATGTTTGATACTGAAACTGGAGTTTTTCTTAGTAGAGCTCTTTCAAAGCATGCAGGTTTGAAGGAGGTCTATTTGAGCTACTTGAACTTAGGAGATGAAGGCACCAGTGCCATAGCCAATGCTCTAAAGGAAACTGCTCCTTCACTTGAAGTCTTGGAAATGGCTGGAAATGATATAACGGCAAATGTCGCTTCGGATATAGCTGCTTGCATATCGAAAAAGCAGCACCTTTCCAAATTGAACTTGTCCGAGAATGAACTCAAGGACGAAGGGGTGGTATTGATCAGCAAGGCTCTAGAAGATCACACCCATTTGAAAGAAGTTGATATGAGTACCAACTCAATGGGGAGGGCCGGAGCCCGGGTTTTGGCTCAAATTGTGGTTCAGAAATTGGAGTTCATGCTGCTCAACATTAATGGGAATTACATCTCCGATGAAGGCATCGACGAGTTGAAGGATATTTTCAAGAAATCTCCAGTTATGCTTGGTTCTCTGGATGAAAACGACCCTGAAGGAGGGGACGATGATGGAGGAGAATCTGCCACAGGCGGAGACGGCGAGGAAGAACTGGAAACTAAGTTGAAGAAGCTTGAAGTCACAGAGGAGGATTAA 1011 44.51 MKIFATALQGSILRSLNLSNNALGEKGVRAFGALLKSQNCLEELYLINGGISEEAARAVAELIPSTEKLKILHFHNNMTSDEGAIAISEVVKQSPLLENFRCSSTRIGSEGGIALSIALGTFTSLRKLDLTDNMFDTETGVFLSRALSKHAGLKEVYLSYLNLGDEGTSAIANALKETAPSLEVLEMAGNDITANVASDIAACISKKQHLSKLNLSENELKDEGVVLISKALEDHTHLKEVDMSTNSMGRAGARVLAQIVVQKLEFMLLNINGNYISDEGIDELKDIFKKSPVMLGSLDENDPEGGDDDGGESATGGDGEEELETKLKKLEVTEED 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1844218 1845228 + Bda000999.2 Bda13g00139 18270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00139 336 MobiDBLite consensus disorder prediction 319 336 - -
Bda13g00139 336 Gene3D Ribonuclease Inhibitor 2 146 IPR032675 -
Bda13g00139 336 Gene3D Ribonuclease Inhibitor 147 304 IPR032675 -
Bda13g00139 336 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 1 336 IPR045203 GO:0005096
Bda13g00139 336 Coils Coil 320 336 - -
Bda13g00139 336 MobiDBLite consensus disorder prediction 301 318 - -
Bda13g00139 336 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 1 336 - -
Bda13g00139 336 SMART LRR_RI_2 10 37 - -
Bda13g00139 336 SMART LRR_RI_2 235 262 - -
Bda13g00139 336 SMART LRR_RI_2 150 177 - -
Bda13g00139 336 SMART LRR_RI_2 38 65 - -
Bda13g00139 336 SMART LRR_RI_2 207 234 - -
Bda13g00139 336 SMART LRR_RI_2 179 206 - -
Bda13g00139 336 SMART LRR_RI_2 94 121 - -
Bda13g00139 336 SMART LRR_RI_2 263 290 - -
Bda13g00139 336 SMART LRR_RI_2 66 93 - -
Bda13g00139 336 SMART LRR_RI_2 122 149 - -
Bda13g00139 336 Pfam Leucine Rich repeat 207 228 IPR001611 GO:0005515
Bda13g00139 336 Pfam Leucine Rich repeat 153 172 IPR001611 GO:0005515
Bda13g00139 336 Pfam Leucine Rich repeat 235 257 IPR001611 GO:0005515
Bda13g00139 336 Pfam Leucine Rich repeat 13 31 IPR001611 GO:0005515
Bda13g00139 336 SUPERFAMILY RNI-like 9 306 - -
Bda13g00139 336 MobiDBLite consensus disorder prediction 295 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00139 K14319 RANGAP1; Ran GTPase-activating protein 1 - zju:107423048 451.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00139 Bda-Chr13:1844218 Bda07g00394 Bda-Chr7:4904633 5.70E-06 dispersed
Bda13g00135 Bda-Chr13:1757891 Bda13g00139 Bda-Chr13:1844218 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0032652 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00139 Bda_Chr13 FPKM 5.570523 5.660938 8.806702 8.6475 10.645548 10.98831 10.951043 10.141583 9.780148