Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00140 ATGGCTCAGCTGGACAGCCAGCAACCCTCCCTCCACCATCTCCGTCGCGCCAAGTCTTTGATTTCTGCCCTCAACCTCGTCTCCCGCAATCTTCCTCTGCCTCCTCAACTTTTTGACACCGTTTCCTCCATCTATTCCGCTGCTCCAGCCGAAAACGACGACTCCTGCGACGATGATACTCATCAGAGTGACCCTCAAGAAGATTTATTGAGTGAAATTGAGGATGCCCTAACCAGTCAGCGATCAGAATGCACGTCAAGTTTTGGATTGACAGAATCAAGAGAGAATCGGTATCAGAGCAACGTACACCATCGGCTGGCTGAACTTGAAGAATTACCATCCAATAGAGGAGAGAACTTGCAGACAAAGTGCTTGATTGAGCTTTATGGCTTAAAGATGATATCAAATGCATTAATTATTACATTTTTGAATCGAGTTATGATATTAATTTCCTTTCAGCTGGGAGAATTGCAAAGAAAGGTTCGATCAGATTTGAGCTTGGAGTACTTGCTACATAAGACTTGTGCATATCCCGATAAGCAATTATTTGATTGGGGGATGATGCGGTTGCATCGTCTTCCATATGGTGTAGGAGATTCTTTTGCCACCGAAGCTGATGATATGTTAAGGAAGAAACGGGATGCTGAGAGACTGTCAAGGTTAAAGGAGGAGGAGAAGAACCACGTCGAGACTAGGAAAAGAAAATTTTTTACAGAAATACTCAATGCAGTTCGTGAGTTCCAGTTGCAAAATCAAGCTACTTTGAAACGCCGAAAACAAAGGAATGATGGAATCCAGGCTTGGCATGGAAGGCAAAGACAGCGAGCAACTCGGGCAGAGAAACTGAGGTTCCAAGCACTAAAGGCAGATGACCAAGAAGCGTACATGAGACTGGTTAAGGAGAGCAAGAATGAACGATTAACTATTCTTCTTGAAGAAACTAATAAGTTGCTCGTTAATTTGGGAGCCGCTGTTCAACGGCAAAAGGATTCCAAACTTTCAGATGGCATTGAAACCTTGGATGACTCAGAAACTGATTTGTCTGAGTTGGATACTTCAAAGAATGGAACCCCTCCAGATTTTCTTCCTGAGGAAGATGTGGATGTCAATGATTCAGATCAGAATGATGACGCAGATGATCTACTCGAAGGACAGAGGCAGTATAACTCTGCTATTCATGCTATCCAAGAAAAGGTCACTGAACAACCATCCATGTTGCAAGGAGGAGAATTAAGATCCTATCAAATAGAGGGGCTGCAATGGATGCTTTCTTTATTTAACAACAACTTAAATGGAATTTTGGCTGATGAGATGGGATTGGGAAAGACAATTCAAACCATTTCATTGATTGCTTATCTGATGGAATTCAAGGATGTGACGGGGCCGCACTTGATAGTTGCTCCAAAGGCTGTGCTGCCAAATTGGATGATTGAATTCTCAACATGGGCCCCTAGTGTTGCAGCTGTTCTTTATGATGGGCGTCAAGATGAAAGAAAGGCAATCAAAGAAGAATTATTAGGAGATAGGAAATTTAATGTGTTGGTTACACATTATGATCTAATCATGAGAGATAAATCATTTTTGAAGAAAATCCACTGGTACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCGAGAATGTGCTCTATCACAAACACTTTCGGGTTATCAAATAAAGCGCAGGCTTCTTTTGACTGGTACCCCCATACAGAACAGTTTGCAGGAACTATGGTCCCTACTTAATTTTCTTCTTCCGCATATTTTTAATTCCGTTCAGAATTTCCAGGAGTGGTTTAATGCCCCCTTTGTTGGCCGTGGGGATGTGTCTCTGACAGATGAAGAAGAGCTATTAATCATTCGACGTTTGCATCACGTTATTAGGCCATTTATATTGAGGCGAAAAAAAGACGAAGTGGAGAAATATCTTCCCGGGAAGTCACAGGTCATTCTAAAATGTGATATGTCAGCATGGCAGAAAGTATATTATCAACAAGTTACAGATGATGGCAGAGTTGATACTGGTTCTGGGAAGTCAAAGACTCTGCAGAATCTAACAATGCAGCTTAGAAAGTGTTGTAACCACCCATATCTTTTCATAACTGGAGATTATAACATCTGGCGAAAGGAAGAAATCATCAGAGCATCTGGGAAATTTGAACTGCTTGATCGTTTACTCCCAAAGCTACGCAGAGCCGGACACAGAGTATTGCTTTTCTCACAAATGACACGTCTGATGGACATTCTTGAAATATATCTGCAGCTACACGATTTCAAATATCTTAGACTGGATGGTTCAACAAAAACGGAGGAAAGAGGTTCTCTACTGAAGCAATTCAATGCTCCCGATTCTCCTTTCTTCATGTTTCTCCTGAGTACTCGTGCTGGGGGGCTTGGTTTGAACTTACAGACAGCAGATACCGTTATAATTTTTGACAGTGATTGGAATCCTCAAATGGACCAACAAGCAGAGGATCGTGCCCATCGAATAGGACAAAAGAAAGAAGTTAGGGTGTTTGTCTTAGTTAGTGTTGGATCAATTGAGGAGGTAATATTGGAACGTGCTAAAGAAAAGATGGGCATTGACGCCAAGGTCATCCAGGCAGGACTTTTCAATACGACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATCATGCGTCGAGGAACAAGCTCGCTCGGAACAGATGTGCCTAGCGAGAGAGAAATTAACCGCCTTGCTGCAAGGTCAGATGAGGAATTTTGGCTTTTCGAGAAGATGGACGAGGAGAGAAGACAGAAAGAGAATTACCGATCCCGGCTTATGGAGGAACACGAGGTGCCCGAGTGGGTATACTCTGCACCCGATAACAAGGAAGAAAAGAACAGAGGTTTCGACAGCATTACCGGAAAACGGCGAAGAAAGGAGGTGGTTTATGCAGATTCACTCAGTGACTTGCAGTGGATGAGGGCAGTAGAAAATGGAGAAGATATATACAGCCTTTCTGTTAAAGGGAAGAGAAGAGATCTGACAGCTGATGGCACAACAGCAACAATTATAAGCAACTTGAGAGTCGAAAGTAAAGAAATAGAAGTGCACGAAACTGCGACAATTGTTAGTGAAGGCACTAGTGAGGACACCACCGGAGTAGAATCAACCCCGAAGAGGCACAAGTTCGAAGAAGCCATGATTGGAATCCATGAATATGATTCAACCTCGAGAAACGAGTGGCATAACCATATGTTCACATGGAATACTCATAAGAAAAAGAGATCTAGCTATGTAAATCAAGGCTCATCTACTGATTCTAGAGGACATAATTCGTATGGAAGAGGAAATGGGTGGTCTTGA 3339 42.53 MAQLDSQQPSLHHLRRAKSLISALNLVSRNLPLPPQLFDTVSSIYSAAPAENDDSCDDDTHQSDPQEDLLSEIEDALTSQRSECTSSFGLTESRENRYQSNVHHRLAELEELPSNRGENLQTKCLIELYGLKMISNALIITFLNRVMILISFQLGELQRKVRSDLSLEYLLHKTCAYPDKQLFDWGMMRLHRLPYGVGDSFATEADDMLRKKRDAERLSRLKEEEKNHVETRKRKFFTEILNAVREFQLQNQATLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTILLEETNKLLVNLGAAVQRQKDSKLSDGIETLDDSETDLSELDTSKNGTPPDFLPEEDVDVNDSDQNDDADDLLEGQRQYNSAIHAIQEKVTEQPSMLQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEFKDVTGPHLIVAPKAVLPNWMIEFSTWAPSVAAVLYDGRQDERKAIKEELLGDRKFNVLVTHYDLIMRDKSFLKKIHWYYMIVDEGHRLKNRECALSQTLSGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFVGRGDVSLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDDGRVDTGSGKSKTLQNLTMQLRKCCNHPYLFITGDYNIWRKEEIIRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLQLHDFKYLRLDGSTKTEERGSLLKQFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKEKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHEVPEWVYSAPDNKEEKNRGFDSITGKRRRKEVVYADSLSDLQWMRAVENGEDIYSLSVKGKRRDLTADGTTATIISNLRVESKEIEVHETATIVSEGTSEDTTGVESTPKRHKFEEAMIGIHEYDSTSRNEWHNHMFTWNTHKKKRSSYVNQGSSTDSRGHNSYGRGNGWS 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1845894 1852304 - Bda001000.1 Bda13g00140 18271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00140 1112 SMART ultradead3 407 599 IPR014001 -
Bda13g00140 1112 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 423 588 IPR014001 -
Bda13g00140 1112 Gene3D - 402 644 IPR038718 -
Bda13g00140 1112 Gene3D - 645 863 IPR027417 -
Bda13g00140 1112 PANTHER ATP-DEPENDENT HELICASE BRM 12 1065 - -
Bda13g00140 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 886 IPR027417 -
Bda13g00140 1112 Pfam Snf2-ATP coupling, chromatin remodelling complex 926 985 IPR029295 GO:0042393
Bda13g00140 1112 Pfam SNF2-related domain 414 699 IPR000330 GO:0005524|GO:0140658
Bda13g00140 1112 Coils Coil 923 943 - -
Bda13g00140 1112 PANTHER SNF2/RAD54 HELICASE FAMILY 12 1065 - -
Bda13g00140 1112 SMART SnAC_2 925 985 IPR029295 GO:0042393
Bda13g00140 1112 CDD SF2_C_SNF 710 843 - -
Bda13g00140 1112 MobiDBLite consensus disorder prediction 364 378 - -
Bda13g00140 1112 Pfam Helicase conserved C-terminal domain 719 832 IPR001650 -
Bda13g00140 1112 SMART helicmild6 748 832 IPR001650 -
Bda13g00140 1112 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 722 889 IPR001650 -
Bda13g00140 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 635 IPR027417 -
Bda13g00140 1112 MobiDBLite consensus disorder prediction 330 379 - -
Bda13g00140 1112 MobiDBLite consensus disorder prediction 1084 1112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00140 - - - csv:101222943 1704.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01046 Bda13g00140 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01334 Bda-Chr9:45081508 Bda13g00140 Bda-Chr13:1845894 6.88E-132 dispersed
Bda11g01874 Bda-Chr11:53795238 Bda13g00140 Bda-Chr13:1845894 1.36E-132 dispersed
Bda12g00701 Bda-Chr12:33852936 Bda13g00140 Bda-Chr13:1845894 1.52E-79 dispersed
Bda13g00140 Bda-Chr13:1845894 Bda13g00159 Bda-Chr13:2063395 7.10E-06 dispersed
Bda13g00574 Bda-Chr13:6726537 Bda13g00140 Bda-Chr13:1845894 3.00E-10 dispersed
Bda13g00140 Bda-Chr13:1845894 Bda08g00281 Bda-Chr8:2924187 2.60E-153 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
Vvi15g355 . Blo12g00182 Bda03g01046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0509 . . . . . . . . . . Bda13g00140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16844 PF00176 SNF2_N 7.20E-68 CL0023 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00140 Bda_Chr13 FPKM 0.0 0.0 1.765491 1.89226 36.063541 40.870846 33.549923 0.0 0.0