Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00143 ATGGGTCCTGAATTGGATGTGAAAGGAAATATTGATGCTGTGGTGGAGGTTTCAGAAAATAAAGAGAATAACAATGCCACTCAAGGCCAAGATCACATGCTTTTACGGTGTGCCAATAAGGGTGAAAACAAAATTTTCACAGAATCTTTGTCCACTGAACCAACTATCATACCAGGTCAACATGAGGATGTGGAGATTAATATAACTGAGTGTACTAATGATTGTGATGGTGGGCTAATTGAAAGTGAGTGCCAAGATGCAACTGAAAATTCAAGCTCTTTTTCTGATACAGTATCTGGAACAGAAAATAATTTATCGGATAATGAAGAAGTTGAGTCCCAACTATGTGATGCCAATTCACTGGAGCCAGTTTATAGTCAATATCGCGAAGAATTCCAAATGAGGCAAAAGAAGTTGACAATGCATTGGAGGAAGTTTATTCGTCCTCTCATGTGGCGTTGTAAATGGACTGAACTGCAAATTAGGGAGCTTAAATCCAAAGCACTAAAATATGACAGAGAACTTTCATCACATAATTCATTCCATAATTTAGAAGTTTCTGATATAAAGTCGTTACCAATACCAAGTCAAAGGCACAGAAGTAAGATTTTGAAGAGAATGAAAAGAAAGCGGATTGAAGAGACCCTAGATGTAGCGTCATATATGTTACACCATAATCTTTTCTCCTATTATGATAAGAATGGTATTAGAAATGATGAGTGTGGAACAGCTGAAGGATGGTCGTCTTTCAACTTAAGAGATGGTGAAAATTCCTTAGAACATATCTTTTCTAGGATTGAAGTGATGCAGTCAGAAGTTCAGAAGTTGAAAAGCAGAGTTGACAAGGTAGTTAATGAGAATCCCATGAAGTTCTCTTCCATAAATAAGTTAAGCTTTCTAGCTCCAAGCGATAGTCCCAACTCTCCCGAAGGGGAAAATAGATTCCCAGATTCATCTCGGCACATATCTGAATATTTGGGAGACATGCTTATGACAGAAGGTGCAGTGTCTAGTCGTGCCAACATTCCCTTGTTTTCTGATTTGATTGAAGGACCAGATAAGTCCCAGATTTCAGGGTCATCCGAAAATGCAGAGGACGATATTCTGATTCATAATCAAGCAGCCAAGGATGAGTTGCGTGATTTTGAAAATATTAGAGGCCAATTCACGGACCAACCTCAGGTTTTGCCAGAAGATCGTAAACCAGTTCTTCCAACATCTGCAACCGCAGATGATTTAAACTCAAAGATTGTGGAACCCGTTCTGTCGCCTAAGCTGCAATCACTTTCAGCTGTAAAATCAAATTTCGATCGAAACAAAAAAAGGCGAAGAAGGAGAAGATAG 1344 38.76 MGPELDVKGNIDAVVEVSENKENNNATQGQDHMLLRCANKGENKIFTESLSTEPTIIPGQHEDVEINITECTNDCDGGLIESECQDATENSSSFSDTVSGTENNLSDNEEVESQLCDANSLEPVYSQYREEFQMRQKKLTMHWRKFIRPLMWRCKWTELQIRELKSKALKYDRELSSHNSFHNLEVSDIKSLPIPSQRHRSKILKRMKRKRIEETLDVASYMLHHNLFSYYDKNGIRNDECGTAEGWSSFNLRDGENSLEHIFSRIEVMQSEVQKLKSRVDKVVNENPMKFSSINKLSFLAPSDSPNSPEGENRFPDSSRHISEYLGDMLMTEGAVSSRANIPLFSDLIEGPDKSQISGSSENAEDDILIHNQAAKDELRDFENIRGQFTDQPQVLPEDRKPVLPTSATADDLNSKIVEPVLSPKLQSLSAVKSNFDRNKKRRRRRR 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1910417 1913203 + Bda001003.1 Bda13g00143 18274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00143 447 Coils Coil 266 286 - -
Bda13g00143 447 MobiDBLite consensus disorder prediction 300 319 - -
Bda13g00143 447 CDD AT4G37440_like 62 286 IPR038745 -
Bda13g00143 447 PANTHER ELONGATION FACTOR 1 447 - -
Bda13g00143 447 PANTHER BNAA08G15670D PROTEIN 1 447 - -
Bda13g00143 447 MobiDBLite consensus disorder prediction 389 410 - -
Bda13g00143 447 MobiDBLite consensus disorder prediction 90 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00143 - - - jre:109016538 343.969
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01264 Bda13g00143 CCT
Bda03g01264 Bda13g00143 ECH
Bda11g00412 Bda13g00143 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00143 Bda-Chr13:1910417 Bda13g00538 Bda-Chr13:6390365 3.36E-47 dispersed
Bda11g00412 Bda-Chr11:4419625 Bda13g00143 Bda-Chr13:1910417 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g412 . . Bda03g01264 . . . Bma04g01174 . . . . Cma14g01668 Car06g01245 Car14g01502 Sed02g1281 Cpe08g00232 Cpe03g01408 Bhi01g00873 Tan10g0907 Cmetu06g1518 . . . . . . . . . . . . . Cone7ag0205 Cone4ag0196 Lsi05g01467 . . Cme06g00659 . . . Bda13g00143 . . . . . Cmo06g01445 Cmo14g01714 . . . . . . . . . . . . . . . . . . . . . Csa03g01384 Chy06g00627 .
Vvi15g331 . . . . . . . . . . Cma06g00998 Cma14g02142 Car06g00827 . Sed12g0556 Cpe08g00622 . Bhi01g00549 Tan10g0063 Cmetu06g2761 . Hepe05g2066 . Lcy11g2092 Cla05g00047 Cam05g0052 Cec05g0050 Cco05g0056 Clacu05g0044 Cmu05g0045 Cre05g0111 . . . . Lsi05g02177 . . Cme06g00052 Blo02g00191 . Bda11g00412 Bda13g00143 . . . Bma06g01371 . Cmo06g01006 Cmo14g02209 . . . . . . . . . . . . . . . . . . . . . Csa03g00760 Chy06g00054 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006287 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 2 1 1 1 2 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00143 Bda_Chr13 FPKM 0.990911 0.698245 4.818543 4.354237 1.742451 1.829373 1.640671 18.30731 20.877769