Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda13g00170 ATGGCTGCCGTTTCTATCTGCTTCGCGCCTCAAGCTATGGCTCGACCGCGAGTTCGAAGTCCTAGGAGACTTTCACAGGGCAAAAAACTACATGGAAACCCTAATTTTAACCGGAATCAAGTGAAGGTACAAACCAGTTCTAAGGAGTTGTCGTCCAGTGGCGTCGAGGCGACCACCTACACTCGTCTTCCCCCCAAAGAAGATTTCGCTACTCTCTGCGTTGATTCTGCTTCATTTTCTTCTCCAGAATCTCAGTTTCCGTTCGAGGTGAAGCTCTCCGATTCCGATGTGGTGAATAAAGGAGAAGAATCTGATTGTCTGAACGGAGAAGAAGAAAATGATGAAGCTGGAGGGAGTATGGATGATGTTTTTGCAATTGATTACTTTAAGGGGGAATTACGTGCTGACGGAGAGGAATACGAAATCAGCGATGAGGAAGATGAAGAGGGTGTTGATTATGGAGATGAAAATGGTGATGTAGAATATCTGAATTCTGGGGATGGTGAAGTGGTTAGTTTTTCCGATGAGGAAGAAGATGTGAAGGAAAAAGGTGTGCCAGCAGTAATGAGATGCTTCGATCGTGCAAAAATCTATGCCAAAGCTGGGGATGGTGGGAATGGCGTCGTAGCTTTCCGGCGGGAGAAGTTCGTGCCTTTGGGTGGGCCATCTGGAGGAGATGGAGGAAGAGGAGGGAATGTGTATGTTGAAGTGGATGAATCGATGAATTCTCTATTGCCATTTCGAAATAGAGTGCATTACCGAGCCCAGAGGGGTAGTCATGGACAGGGGAGGATGCAAAACGGAGCAAAAGGAGAGGATGTAGTGATAAAGGTAGCTTCTGGTACAGTAATCAGAAAGGCAGGTAGCGATGAAATTTTTCTTGAATTGTTATATCCAGAACAACGAGCACTGTTGTTGCCAGGTGGGAGAGGTGGAAGAGGCAATGTATCCTTCAAATCAGGAAGTAATAAGGTTCCTAAGATTGCGGAAAATGGAGAAGAGGGTCCAGAAATGTGGCTGGACTTGGAGTTAAAACTAGTTGCAGATGTTGGTATAGTTGGGGCTCCAAATGCTGGAAAAAGCACATTACTAAGCGTGATAAGTGCTGCGCAGCCAGCCATAGCAAATTACCCCTTTACAACTTTGCTACCTAACTTAGGTGTGGTTTCATTTGATTATGATTCTACTATTGTAGTGGCAGATCTACCAGGTTTACTTGAAGGGGCGCACCGAGGCCTTGGTTTAGGCCACGAGTTTCTACGACATACTGAAAGGTGTTCTTCTCTGGTGCACGTAGTTGATGGATCAGGACCTCAACCAGAATATGAGTTCGAGGCCATTCGCCTGGAGTTGGAACTCTTTAGTCCTGAACTAGCAAAAAAGCCTTATGTAGTTGCCTACAACAAAATGGACCTTCCAGAAGCATATGAAAACTGGCCCTCATTCAAGGAAAAGTTGCAAGCACGCGGGATTGAACCTTTTTGTATAAGTGCAGTAAAAAGAGAGGGAACTTATGATGTGATTTGTGCTGCTTTTGAGCTGTTAAAGAAAAATAAAGAAATTAAGGAGTTTGAAGGTGTGAGACTCCCGGAAAACTTGAACCATGTAGCTGATATGGTTAGGAAGCAACGAAGTGCCTCTATAAATGACTTTGAGATCTCTTACGATAGCAACTCTAGATCCTGGCATGTGGATGGATCTGGTTTGGAGCGTTTTGTTCAGATGACAAATTGGCGGTACATGGACTCTGAGAAAAGGTTTCAACATGTTTTAGAGGCTTGTGGTGTGAATAAATCTCTTCTGAGACTTGGGGTAAAGGAAGGTGACACAGTGCATGTTGCTGGGATGGAAATGGTTTGGAATAACTCACCTGATAGTTTCGGTCCATCTAAGGTGAAGAAAGGGCCAGCAGATTCAATTAAATGGGCCGAGTGGAAGTAA 1941 44.67 MAAVSICFAPQAMARPRVRSPRRLSQGKKLHGNPNFNRNQVKVQTSSKELSSSGVEATTYTRLPPKEDFATLCVDSASFSSPESQFPFEVKLSDSDVVNKGEESDCLNGEEENDEAGGSMDDVFAIDYFKGELRADGEEYEISDEEDEEGVDYGDENGDVEYLNSGDGEVVSFSDEEEDVKEKGVPAVMRCFDRAKIYAKAGDGGNGVVAFRREKFVPLGGPSGGDGGRGGNVYVEVDESMNSLLPFRNRVHYRAQRGSHGQGRMQNGAKGEDVVIKVASGTVIRKAGSDEIFLELLYPEQRALLLPGGRGGRGNVSFKSGSNKVPKIAENGEEGPEMWLDLELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTIVVADLPGLLEGAHRGLGLGHEFLRHTERCSSLVHVVDGSGPQPEYEFEAIRLELELFSPELAKKPYVVAYNKMDLPEAYENWPSFKEKLQARGIEPFCISAVKREGTYDVICAAFELLKKNKEIKEFEGVRLPENLNHVADMVRKQRSASINDFEISYDSNSRSWHVDGSGLERFVQMTNWRYMDSEKRFQHVLEACGVNKSLLRLGVKEGDTVHVAGMEMVWNNSPDSFGPSKVKKGPADSIKWAEWK 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2181892 2188034 + Bda001032.3 Bda13g00170 18301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda13g00170 646 Pfam GTP1/OBG 193 346 IPR006169 -
Bda13g00170 646 Pfam 50S ribosome-binding GTPase 349 469 IPR006073 GO:0005525
Bda13g00170 646 ProSitePatterns GTP1/OBG family signature. 401 414 IPR006074 GO:0005525
Bda13g00170 646 Gene3D - 553 622 IPR036346 -
Bda13g00170 646 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 348 516 IPR031167 GO:0005525
Bda13g00170 646 MobiDBLite consensus disorder prediction 100 119 - -
Bda13g00170 646 Hamap GTPase Obg [obg]. 190 516 IPR014100 GO:0000287|GO:0003924|GO:0005525
Bda13g00170 646 SUPERFAMILY Obg GTP-binding protein N-terminal domain 192 346 IPR036726 -
Bda13g00170 646 Pfam Domain of unknown function (DUF1967) 551 620 IPR015349 GO:0000166
Bda13g00170 646 Gene3D - 348 552 IPR027417 -
Bda13g00170 646 ProSiteProfiles Obg C-terminal (OCT) domain profile. 543 622 IPR015349 GO:0000166
Bda13g00170 646 SUPERFAMILY Obg GTP-binding protein C-terminal domain 550 622 IPR036346 -
Bda13g00170 646 TIGRFAM Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 551 621 IPR015349 GO:0000166
Bda13g00170 646 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 154 595 IPR045086 GO:0003924|GO:0005525
Bda13g00170 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 520 IPR027417 -
Bda13g00170 646 CDD Obg 348 515 IPR031167 GO:0005525
Bda13g00170 646 PRINTS GTP1/OBG GTP-binding protein family signature 371 389 IPR006073 GO:0005525
Bda13g00170 646 PRINTS GTP1/OBG GTP-binding protein family signature 416 434 IPR006073 GO:0005525
Bda13g00170 646 PRINTS GTP1/OBG GTP-binding protein family signature 350 370 IPR006073 GO:0005525
Bda13g00170 646 PRINTS GTP1/OBG GTP-binding protein family signature 399 414 IPR006073 GO:0005525
Bda13g00170 646 Gene3D GTP1/OBG domain 187 346 IPR036726 -
Bda13g00170 646 MobiDBLite consensus disorder prediction 17 38 - -
Bda13g00170 646 TIGRFAM Obg_CgtA: Obg family GTPase CgtA 192 514 IPR014100 GO:0000287|GO:0003924|GO:0005525
Bda13g00170 646 ProSiteProfiles Obg domain profile. 189 347 IPR006169 -
Bda13g00170 646 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 154 595 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda13g00170 - - - cmax:111472313 899.427
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01253 Bda-Chr8:51170892 Bda13g00170 Bda-Chr13:2181892 5.91E-46 dispersed
Bda13g00170 Bda-Chr13:2181892 Bda13g00887 Bda-Chr13:10511607 3.90E-10 dispersed
Bda13g00170 Bda-Chr13:2181892 Bda13g00457 Bda-Chr13:5510391 3.30E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda13g00170 Bda_Chr13 FPKM 2.973482 2.700876 4.354006 4.169661 5.092495 5.470376 6.146427 6.402414 5.782877